BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0230.p
         (441 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310046|ref|YP_003774138.1| chloride-channel protein [Herba...   868   0.0  
gi|300311435|ref|YP_003775527.1| chloride channel protein [Herba...    74   2e-14

>gi|300310046|ref|YP_003774138.1| chloride-channel protein
           [Herbaspirillum seropedicae SmR1]
          Length = 441

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/441 (99%), Positives = 441/441 (100%)

Query: 1   LPSSASSQEQQERQLSLYQLSKSHLRRLWVEYGILWSGAVIVGLVAVLYAQAIEIGFGVF 60
           +PSSASSQEQQERQLSLYQLSKSHLRRLWVEYGILWSGAVIVGLVAVLYAQAIEIGFGVF
Sbjct: 1   MPSSASSQEQQERQLSLYQLSKSHLRRLWVEYGILWSGAVIVGLVAVLYAQAIEIGFGVF 60

Query: 61  RSIQHRSPWLPLLLTPAVCAACVWLTRRYFPGSEGSGIPQAIATLHGDTAERGSTLLSLR 120
           RSIQHRSPWLPLLLTPAVCAACVWLTRRYFPGSEGSGIPQAIATLHGDTAERGSTLLSLR
Sbjct: 61  RSIQHRSPWLPLLLTPAVCAACVWLTRRYFPGSEGSGIPQAIATLHGDTAERGSTLLSLR 120

Query: 121 VLLGKIVLSVVAIAGGMTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGL 180
           VLLGKIVLSVVAIAGGMTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGL
Sbjct: 121 VLLGKIVLSVVAIAGGMTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRLILAGAAAGL 180

Query: 181 AAAFNTPLAGIVFAIEELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGET 240
           AAAFNTPLAGIVFAIEELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGET
Sbjct: 181 AAAFNTPLAGIVFAIEELSRSFEQRASGVVITTIIFAGLVALSINGNYTYFGSIAFPGET 240

Query: 241 SGRLILAVIVTAVLMGVAGGLFCWLILNPTRWIPPALVTLRTERPVAFAAVCGFIVAVIG 300
           SGRLILAVIVTAVLMGVAGGLFCWLILNPTRWIPPALVTLRTERPVAFAAVCGFIVAVIG
Sbjct: 241 SGRLILAVIVTAVLMGVAGGLFCWLILNPTRWIPPALVTLRTERPVAFAAVCGFIVAVIG 300

Query: 301 VAAGGATFGSGYEQAHGLLNDGQGLSVFYPFLKFASMIGSYLPGLPGGIFAPSLSIGAGF 360
           VAAGGATFGSGYEQAHGLLNDGQGLSVFYPFLKFASMIGSYLPGLPGGIFAPSLSIGAGF
Sbjct: 301 VAAGGATFGSGYEQAHGLLNDGQGLSVFYPFLKFASMIGSYLPGLPGGIFAPSLSIGAGF 360

Query: 361 GNLLHLLFGGTSLPMLVALAMVGYLAAVTQSPITAFVIVMEMVDGHALVISLMATALIAS 420
           GNLLHLLFGGTSLPMLVALAMVGYLAAVTQSPITAFVIVMEMVDGHALVISLMATALIAS
Sbjct: 361 GNLLHLLFGGTSLPMLVALAMVGYLAAVTQSPITAFVIVMEMVDGHALVISLMATALIAS 420

Query: 421 AVSKVFAPPLYETLAERYLKS 441
           AVSKVFAPPLYETLAERYLKS
Sbjct: 421 AVSKVFAPPLYETLAERYLKS 441


>gi|300311435|ref|YP_003775527.1| chloride channel protein
           [Herbaspirillum seropedicae SmR1]
          Length = 555

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 116/406 (28%), Positives = 178/406 (43%), Gaps = 48/406 (11%)

Query: 58  GVFRSIQHRSPWLPLLLTPAVCAACV------WLTRRYFPGSEGSGIPQAIATLHGDTAE 111
           G F  I    PW   +L P  C   V      W  R   P   G    +A+A   GD A 
Sbjct: 35  GSFVDIAKGLPWYTRVLLP-TCGGVVAGLFLVWAKRT--PAGNGGDYMEAVAI--GDGA- 88

Query: 112 RGSTLLSLRVLLGKIVLSVVAIAGGMTIGREGPTVQIGAAIMYNLRRLYPAGYEHMERRL 171
                + +R  L + + S+ +IA G +IGREGP VQ+ +A+  +L   +        R L
Sbjct: 89  -----IPVRNTLLRSISSLASIASGGSIGREGPMVQL-SALCASLVGKFSHFPSSRLRLL 142

Query: 172 ILAGAAAGLAAAFNTPLAGIVFAIEELSRSFEQRASGVVITTIIFAGLVALSINGNYTYF 231
           +  GAAAG+ +A+N P+AG  F  E +  S    + G V+   + A +    + G    +
Sbjct: 143 VACGAAAGITSAYNAPIAGAFFITEIVLGSLVMESFGPVVVASVVANITMRELPGYRAAY 202

Query: 232 GSIAFPGETSGRLILAVIVTAVLMGVAGGLFCWLILNPTRWIPPALVTLRTERPVAFAAV 291
               FP E  G  ++  +V  VL GV    F    L            LR   PV     
Sbjct: 203 EMPYFP-EIGGWEVMLFLVLGVLAGVLAPQF----LRVLELGKHGFGKLRLPLPVRLGVG 257

Query: 292 CGFIVAVIGVAAGGATFGSGYEQAHGLLNDG---QGLSVFYPFLKFASMI--GSYLPGLP 346
              +V +I V      +G+GY   + LL+     Q + +       A+ I  GS   G  
Sbjct: 258 G-LLVGLISVQV-PEVWGNGYSLVNSLLHTSWVWQAVLMVLVVKVLATSITVGS---GAV 312

Query: 347 GGIFAPSLSIGAGFGNLLHLLFGGTSLPML-------VALAMVG---YLAAVTQSPITAF 396
           GGIF P+L +GA  G     LFG  +  +L        A AMVG   +LAA + +P+ A 
Sbjct: 313 GGIFTPTLFVGAAVG----YLFGDAAQALLPVHISQPFAYAMVGMGAFLAAASYAPLMAI 368

Query: 397 VIVMEMVDGHALVISLMATALIASAVSK-VFAPPLYETLAERYLKS 441
           +++ EM   + +V+ LM + ++A  V++ V    +YE   +R+  +
Sbjct: 369 LMIFEMTLSYQVVLPLMLSCVVAYVVARSVDGRSMYEITLKRHRDN 414


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,228,921
Number of extensions: 47555
Number of successful extensions: 305
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 4
Length of query: 441
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,203,190
Effective search space: 424726070
Effective search space used: 424726070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)