BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0225.p
         (484 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl c...   855   0.0  
gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans isome...    65   2e-11
gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans isome...    60   5e-10

>gi|300310041|ref|YP_003774133.1| parvulin-like peptidyl-prolyl
           cis-trans isomerase [Herbaspirillum seropedicae SmR1]
          Length = 496

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/484 (95%), Positives = 467/484 (96%), Gaps = 2/484 (0%)

Query: 1   VTALLCMLGVISNAQAQFATTIIPVTPPETSAQSAPANGKPPAASPAAPAKAAAPAPAKA 60
           VTALLCMLGVISNAQAQFATTIIPVTPPETSAQ APANGK    + +  A A A APA A
Sbjct: 15  VTALLCMLGVISNAQAQFATTIIPVTPPETSAQPAPANGK--PPAASPAAPAKAAAPAPA 72

Query: 61  TAAAPAPSQARVEPRPVDSIMVVVNNEVITRQEVADRLASVVKRMSAQNVQLPPRDQLVR 120
            A A APSQARVEPRPVDSIMVVVNNEVITRQEVADRLASVVKRMSAQNVQLPPRDQLVR
Sbjct: 73  KATAAAPSQARVEPRPVDSIMVVVNNEVITRQEVADRLASVVKRMSAQNVQLPPRDQLVR 132

Query: 121 QLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQFRTRLEAEGMNYASF 180
           QLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQFRTRLEAEGMNYASF
Sbjct: 133 QLVERMIVERAQAQMAKENGIVVDDAMLDRAMQRIADQNKLSMAQFRTRLEAEGMNYASF 192

Query: 181 REEIRREILSQRLREREVDNKVAVTESEVDNYLAAEANAGGQRQELDIAQILIRVPENAT 240
           REEIRREILSQRLREREVDNKV VTESEVDNYLAAEANAGGQRQELDIAQILIRVPENAT
Sbjct: 193 REEIRREILSQRLREREVDNKVVVTESEVDNYLAAEANAGGQRQELDIAQILIRVPENAT 252

Query: 241 PDQLAQRRERAEDVLRQLKTGADFAKTAAAYSDASDALSGGDLGWRPADRLPQLFLDGVA 300
           PDQLAQRRERAEDVLRQLKTGADFAKTAAAYSDASDALSGGDLGWRPADRLPQLFLDGVA
Sbjct: 253 PDQLAQRRERAEDVLRQLKTGADFAKTAAAYSDASDALSGGDLGWRPADRLPQLFLDGVA 312

Query: 301 KLQDGQVSGLLKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRHILIKVNQVVTAAEAK 360
           KLQDGQVSGLLKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRHILIKVNQVVTAAEAK
Sbjct: 313 KLQDGQVSGLLKSGNGFHILKLVGRRTADGAQAAAPAVQQTHVRHILIKVNQVVTAAEAK 372

Query: 361 RKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWVYPGDTVPEFERAMDQLKPGEV 420
           RKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWVYPGDTVPEFERAMDQLKPGEV
Sbjct: 373 RKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGWVYPGDTVPEFERAMDQLKPGEV 432

Query: 421 SQPIETPFGYHLIQVVERKTDDASKERTRQAARQAIRERKIEEATEDWMRQIRDRAYVEY 480
           SQPIETPFGYHLIQVVERKTDDASKER RQAARQAIRERKI+EATEDWMRQIRDRAYVEY
Sbjct: 433 SQPIETPFGYHLIQVVERKTDDASKERARQAARQAIRERKIDEATEDWMRQIRDRAYVEY 492

Query: 481 RNDE 484
           RNDE
Sbjct: 493 RNDE 496


>gi|300311558|ref|YP_003775650.1| peptidyl-prolyl cis-trans
           isomerase [Herbaspirillum seropedicae SmR1]
          Length = 258

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 73/143 (51%), Gaps = 16/143 (11%)

Query: 339 QQTHVRHILIKVNQVVTAAEAKRKLTELKERLDHGSATFEELAKLYSNDLSASKGGDLGW 398
           ++ H RHIL+   +   A  AK K              FE+LAK   +  SA+ GGDL W
Sbjct: 130 KEYHARHILVDKKEDAEAIIAKLK----------AGTKFEDLAKQSKDTGSAANGGDLDW 179

Query: 399 VYPGDTVPEFERAMDQLKPGEVS-QPIETPFGYHLIQVVE-RKTDDASKERTRQAARQAI 456
             P   V  F  AM  LK GEV+  P++T FG+H+I++ + R     + +  +    +A+
Sbjct: 180 ATPASFVKPFSDAMVALKKGEVTPTPVQTQFGWHVIKLEDVRPAKVPTLDEVKPQIAEAL 239

Query: 457 RERKIEEATEDWMRQIRDRAYVE 479
           +++K++   E    Q+R +A V+
Sbjct: 240 QQKKLQAYQE----QLRAKAKVQ 258


>gi|300311549|ref|YP_003775641.1| peptidyl-prolyl cis-trans
           isomerase D [Herbaspirillum seropedicae SmR1]
          Length = 639

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 4/102 (3%)

Query: 339 QQTHVRHILIKVNQVVTAAEAKRKLTE---LKERLDHGSATFEELAKLYSND-LSASKGG 394
           +Q    HILI V +  +AA+     ++   L  +L      F +LAK  S D  SA  GG
Sbjct: 266 EQRRASHILIAVKKDASAADQAAAKSKAEGLVAQLRKNPGEFAKLAKANSQDPGSAENGG 325

Query: 395 DLGWVYPGDTVPEFERAMDQLKPGEVSQPIETPFGYHLIQVV 436
           DLG+   G  V  FE A   LK GE+S P+++ FGYH+I+V 
Sbjct: 326 DLGYFGKGAMVKPFEDAAFSLKQGEISDPVQSDFGYHIIEVT 367


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.128    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,169,858
Number of extensions: 41112
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 4
Length of query: 484
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 395
Effective length of database: 1,198,455
Effective search space: 473389725
Effective search space used: 473389725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)