BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0224.p
         (766 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310040|ref|YP_003774132.1| organic solvent tolerance trans...  1469   0.0  

>gi|300310040|ref|YP_003774132.1| organic solvent tolerance
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 766

 Score = 1469 bits (3802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 746/766 (97%), Positives = 754/766 (98%)

Query: 1   MIRFSKSLTERTVNWRLARLFSSAMAVASASALLPLSVYAQMTLPAPAAAPAQDQDAPVN 60
           MIRFSKSLTERTVNWRLARLFSSAMAVASASALLPLSVYAQMTLPAP AAPAQDQDAPVN
Sbjct: 1   MIRFSKSLTERTVNWRLARLFSSAMAVASASALLPLSVYAQMTLPAPVAAPAQDQDAPVN 60

Query: 61  VSAEQMTGRPDRQVNLDRDVEVVKGPTTIKSDKAEYRIIQDEVEATGHVWMRRLQDQYTG 120
           VSAEQMTGRPDRQVNLDRDVEVVKGPTTIKSDKAEYRIIQDEVEATGHVWMRRLQDQYTG
Sbjct: 61  VSAEQMTGRPDRQVNLDRDVEVVKGPTTIKSDKAEYRIIQDEVEATGHVWMRRLQDQYTG 120

Query: 121 DHAEMNMGTGAGYVSSPTYLIGKNGGRGKAERIDFISDDQALVTQGTYSTCEAPDPDWYL 180
           DHAEMNMGTGAGYVSSPTYLIGKNGGRGKAERIDFISDDQALVTQGTYSTCEAPDPDWYL
Sbjct: 121 DHAEMNMGTGAGYVSSPTYLIGKNGGRGKAERIDFISDDQALVTQGTYSTCEAPDPDWYL 180

Query: 181 RANTMDLDSGRDVGTVRGGLLYFKDVPILAAPWMSFPLSGERKSGVLPPTIGMTSNGGAE 240
           RANTMDLDSGRDVGTVRGGLLYFKDVPILAAPWMSF LSGERKSGVLPPTIG TS GG E
Sbjct: 181 RANTMDLDSGRDVGTVRGGLLYFKDVPILAAPWMSFALSGERKSGVLPPTIGATSTGGFE 240

Query: 241 LAVPYYFNLAPNYDLTLVPKYIARRGLQMGVETRYMGESYSGSLNAEGIQDRVTGTGRYS 300
           LAVPYYFNLAPNYDLTLVPKYIARRGLQMG ETRYMGESY+G  NAEGIQDRVTGTGRYS
Sbjct: 241 LAVPYYFNLAPNYDLTLVPKYIARRGLQMGAETRYMGESYNGVFNAEGIQDRVTGTGRYS 300

Query: 301 LSSRHRQILAPGLQLDWNVNKASDNDYASDFSHSITGSTTRLLPRNASLSYTSTYWTLVG 360
           LSSRH QILAPGLQLDWN+NKASDNDYASDFSHSITGSTTRLLPR ASL+Y+STYWTLVG
Sbjct: 301 LSSRHSQILAPGLQLDWNLNKASDNDYASDFSHSITGSTTRLLPRTASLTYSSTYWTLVG 360

Query: 361 QVSKYQLLQDVNAPLVKPYDRVPQITFNGTRYDIGGFDFNTVADFTRFSSGSLVGGDRAY 420
           QVSKYQLLQDVNAP+VKPYDRVPQITFNGTRYDIGGFDFNTVADFTRFSSG+LVGGDRAY
Sbjct: 361 QVSKYQLLQDVNAPIVKPYDRVPQITFNGTRYDIGGFDFNTVADFTRFSSGALVGGDRAY 420

Query: 421 LTQSVSYPIVRPGYFITPKAMLDATSYKLNNLAPGQQTDLTRTVPTLSLDAGLIFERESD 480
           LTQSVSYPIVRPGYFITPK  LDATSYKLNNLAPGQQT+LTRTVPTLSLD+GLIFERESD
Sbjct: 421 LTQSVSYPIVRPGYFITPKVTLDATSYKLNNLAPGQQTNLTRTVPTLSLDSGLIFERESD 480

Query: 481 LLGRSMTQTLEPRLFYVRTPYRDQTKLPIFDSGLADFNFAQIFSENRFVGHDRISDANQL 540
           LLGRSMTQTLEPRLFYVRTPYRDQTKLPIFDSGLADFNFAQIFSENRFVGHDRISDANQL
Sbjct: 481 LLGRSMTQTLEPRLFYVRTPYRDQTKLPIFDSGLADFNFAQIFSENRFVGHDRISDANQL 540

Query: 541 TAAVTSRLIEENGLERLRATVGQRYYFADPKVDLTSTSTTATTTTSSGSLGSKSDLLLAL 600
           TAAVTSRLIEENGLERLRATVGQRYYFADPKVDLTSTSTTATTTTSSGSLGSKSDLLLAL
Sbjct: 541 TAAVTSRLIEENGLERLRATVGQRYYFADPKVDLTSTSTTATTTTSSGSLGSKSDLLLAL 600

Query: 601 GGQITREFSTDNTVQYSETLRQMVRSNFGIRWQPAPKRVLNLQYRLDRTYVNPYTGVLDP 660
           GGQITREFSTDNTVQYSETLRQMVRSNFGIRWQPAPKRVLNLQYRLDRTYVNPYTGVLDP
Sbjct: 601 GGQITREFSTDNTVQYSETLRQMVRSNFGIRWQPAPKRVLNLQYRLDRTYVNPYTGVLDP 660

Query: 661 LKQVDVSGQWPLSQRIYAVGRINYSIPDRTVAEGLLGLEYKADCWVFRVVAQRIPTSSTK 720
           LKQVDVSGQWPLSQRIYAVGRINYSIPDRTVAEGLLGLEYKADCWVFRVVAQRIPTSSTK
Sbjct: 661 LKQVDVSGQWPLSQRIYAVGRINYSIPDRTVAEGLLGLEYKADCWVFRVVAQRIPTSSTK 720

Query: 721 ASTGFFFQLELNGFSQIGSNPMDAIKSSVPGYQKVNLPDSTPGNNF 766
           ASTGFFFQLELNGFSQIGSNPMDAIKSSVPGYQKVNLPDSTPGNNF
Sbjct: 721 ASTGFFFQLELNGFSQIGSNPMDAIKSSVPGYQKVNLPDSTPGNNF 766


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,269,426
Number of extensions: 97901
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 1
Length of query: 766
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 673
Effective length of database: 1,179,515
Effective search space: 793813595
Effective search space used: 793813595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)