BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0223.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310039|ref|YP_003774131.1| aminoglycoside phosphotransfera...   642   0.0  

>gi|300310039|ref|YP_003774131.1| aminoglycoside phosphotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/315 (100%), Positives = 315/315 (100%)

Query: 3   PATLRPASADASFRRYFRVDTPDGGSAIVMDAPPPQEDVRPFVEVAGLFAATGVTVPKVL 62
           PATLRPASADASFRRYFRVDTPDGGSAIVMDAPPPQEDVRPFVEVAGLFAATGVTVPKVL
Sbjct: 29  PATLRPASADASFRRYFRVDTPDGGSAIVMDAPPPQEDVRPFVEVAGLFAATGVTVPKVL 88

Query: 63  AQDCERGFLLLSDLGSTTYLSQLSADSAHALYMDAIEALVLLQAQSKPEALPEYDRPLLL 122
           AQDCERGFLLLSDLGSTTYLSQLSADSAHALYMDAIEALVLLQAQSKPEALPEYDRPLLL
Sbjct: 89  AQDCERGFLLLSDLGSTTYLSQLSADSAHALYMDAIEALVLLQAQSKPEALPEYDRPLLL 148

Query: 123 RELELFREWYIGKHLGVTLTDEQNAVLDKTFDAILANNLAQPQVYVHRDYHSRNLMVLPK 182
           RELELFREWYIGKHLGVTLTDEQNAVLDKTFDAILANNLAQPQVYVHRDYHSRNLMVLPK
Sbjct: 149 RELELFREWYIGKHLGVTLTDEQNAVLDKTFDAILANNLAQPQVYVHRDYHSRNLMVLPK 208

Query: 183 GNPGILDFQDAVYGPITYDLVSLLRDAYIQWDEEMVLDWAIRYWEKARRAGLPVTPDIDT 242
           GNPGILDFQDAVYGPITYDLVSLLRDAYIQWDEEMVLDWAIRYWEKARRAGLPVTPDIDT
Sbjct: 209 GNPGILDFQDAVYGPITYDLVSLLRDAYIQWDEEMVLDWAIRYWEKARRAGLPVTPDIDT 268

Query: 243 FYRDFEWMGLQRHLKVLGIFARLWHRDGKDGYLKDIPLVMEYTLKTARRYVAFTPLVRLI 302
           FYRDFEWMGLQRHLKVLGIFARLWHRDGKDGYLKDIPLVMEYTLKTARRYVAFTPLVRLI
Sbjct: 269 FYRDFEWMGLQRHLKVLGIFARLWHRDGKDGYLKDIPLVMEYTLKTARRYVAFTPLVRLI 328

Query: 303 EKLEQEHAPKFGYTF 317
           EKLEQEHAPKFGYTF
Sbjct: 329 EKLEQEHAPKFGYTF 343


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,024,847
Number of extensions: 43381
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)