BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0200.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310017|ref|YP_003774109.1| pyridoxamine 5'-phosphate oxida...   434   e-123

>gi|300310017|ref|YP_003774109.1| pyridoxamine 5'-phosphate oxidase
           [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  434 bits (1116), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/212 (99%), Positives = 212/212 (100%)

Query: 38  MSSLADLRKDYSRASLSETETAADPIDQFAIWFDEASRAQIPEPNAMSVATVGRDGRPSS 97
           MSSLADLRKDYSRASLSETETAADPIDQFAIWFDEASRAQIPEPNAMSVATVG+DGRPSS
Sbjct: 1   MSSLADLRKDYSRASLSETETAADPIDQFAIWFDEASRAQIPEPNAMSVATVGKDGRPSS 60

Query: 98  RIVLIKQFDQQGFTWFTNYDSRKGVDVAENPYVALLFHWVELERQVRIEGKIERVSQEES 157
           RIVLIKQFDQQGFTWFTNYDSRKG+DVAENPYVALLFHWVELERQVRIEGKIERVSQEES
Sbjct: 61  RIVLIKQFDQQGFTWFTNYDSRKGIDVAENPYVALLFHWVELERQVRIEGKIERVSQEES 120

Query: 158 DAYFYSRPLASQLGAIASQQSRTVESREKLEQQYETTKQQFGEHPSRPEHWGGYRVIPER 217
           DAYFYSRPLASQLGAIASQQSRTVESREKLEQQYETTKQQFGEHPSRPEHWGGYRVIPER
Sbjct: 121 DAYFYSRPLASQLGAIASQQSRTVESREKLEQQYETTKQQFGEHPSRPEHWGGYRVIPER 180

Query: 218 IEFWQGRPSRMHDRVLYTRDASGQWQRQRLQP 249
           IEFWQGRPSRMHDRVLYTRDASGQWQRQRLQP
Sbjct: 181 IEFWQGRPSRMHDRVLYTRDASGQWQRQRLQP 212


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 760,813
Number of extensions: 29689
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)