BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0198.p
         (214 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide re...   366   e-103
gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide re...   165   2e-42

>gi|300310015|ref|YP_003774107.1| peptide methionine sulfoxide
           reductase MsrA protein [Herbaspirillum seropedicae SmR1]
          Length = 183

 Score =  366 bits (940), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/177 (99%), Positives = 176/177 (99%)

Query: 1   MAKEIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA 60
           MAKEIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA
Sbjct: 7   MAKEIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLA 66

Query: 61  FDPQQISYRELLEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEMALV 120
           FDPQQISYRELLEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEMALV
Sbjct: 67  FDPQQISYRELLEIFFTIHDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEMALV 126

Query: 121 WDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSKSE 177
           WDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSK E
Sbjct: 127 WDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVFAEKSKPE 183


>gi|300312353|ref|YP_003776445.1| peptide methionine sulfoxide
           reductase [Herbaspirillum seropedicae SmR1]
          Length = 229

 Score =  165 bits (418), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 80/170 (47%), Positives = 114/170 (67%), Gaps = 3/170 (1%)

Query: 4   EIAVLGGGCFWCLEAVYQQVRGVESVESGYTGGSVVNPSYEQVCGGQTGHAEVVKLAFDP 63
           E  VL GGCFW ++ V+Q  +GV    SGY GG     +Y  V  G TGHAE V++ +DP
Sbjct: 46  ETLVLAGGCFWGVQGVFQHTQGVLKAVSGYAGGKADTATYAMVSSGSTGHAEAVQVTYDP 105

Query: 64  QQISYRELLEIFFTI-HDPTTLNRQGNDVGTQYRSVIYYQDEAQHDTARHIIAEM--ALV 120
           ++IS+ +LL+I+F++ HDPT LNRQG D GTQYRS I+  +E Q + A+  IA++  A V
Sbjct: 106 RKISFGQLLQIYFSVAHDPTQLNRQGPDQGTQYRSAIFTANEQQKEAAQAYIAQLNAAKV 165

Query: 121 WDAPIVTELSPPQPYYRAEDYHQNYFVQHPFQGYCAFVVAPKVAKLREVF 170
           + APIVT+++  Q +Y AEDYHQ+Y   HP Q Y A+   PK+  L++++
Sbjct: 166 YGAPIVTQVTALQGFYAAEDYHQDYATLHPNQPYIAYNDLPKIGNLQKMY 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 723,182
Number of extensions: 27879
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 133
Effective length of database: 1,236,335
Effective search space: 164432555
Effective search space used: 164432555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)