BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0193.p
         (404 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole ca...   636   0.0  
gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide formy...    87   3e-18

>gi|300310010|ref|YP_003774102.1| phosphoribosylaminoimidazole
           carboxylase ATPase subunit [Herbaspirillum seropedicae
           SmR1]
          Length = 401

 Score =  636 bits (1640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/314 (99%), Positives = 314/314 (100%)

Query: 1   MTQQSASPLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVA 60
           MTQQSASPLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVA
Sbjct: 1   MTQQSASPLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVA 60

Query: 61  DRLINAGYDDGPALAELGALCAAITTEFENVSAKSLATLAAQTFVAPAASGVSIAQDRTA 120
           DRLINAGYDDGPALAELGALCAAITTEFENVSAKSLATLAAQTFVAPAASGVSIAQDRTA
Sbjct: 61  DRLINAGYDDGPALAELGALCAAITTEFENVSAKSLATLAAQTFVAPAASGVSIAQDRTA 120

Query: 121 EKAFFTECGSQSGVLPAPHLVINSEADIEGLDANLLPGILKTARMGYDGKGQVRVRSIEE 180
           EKAFFTECGSQSGVLPAPHLVINSEADIEGLDANLLPGILKTARMGYDGKGQVRVRS+EE
Sbjct: 121 EKAFFTECGSQSGVLPAPHLVINSEADIEGLDANLLPGILKTARMGYDGKGQVRVRSVEE 180

Query: 181 VRAAFASMGGVTCVLEKMLPLAYEVSVLVARGHDGQAVVYPIAENVHRDGILFTTTVPGP 240
           VRAAFASMGGVTCVLEKMLPLAYEVSVLVARGHDGQAVVYPIAENVHRDGILFTTTVPGP
Sbjct: 181 VRAAFASMGGVTCVLEKMLPLAYEVSVLVARGHDGQAVVYPIAENVHRDGILFTTTVPGP 240

Query: 241 NIKADAAARAQQAALQIIGALQYVGVLCIEFFVLEDGALVVNEMAPRPHNSGHYTIDACV 300
           NIKADAAARAQQAALQIIGALQYVGVLCIEFFVLEDGALVVNEMAPRPHNSGHYTIDACV
Sbjct: 241 NIKADAAARAQQAALQIIGALQYVGVLCIEFFVLEDGALVVNEMAPRPHNSGHYTIDACV 300

Query: 301 TSQFEQQARAMARL 314
           TSQFEQQARAMARL
Sbjct: 301 TSQFEQQARAMARL 314


>gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide
           formyltransferase 2 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 403

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 151/324 (46%), Gaps = 23/324 (7%)

Query: 7   SPLRPAVPSTTPATWLGVMGGGQLGRMFAHAAQSMGFKVAVLEADADCPAGQVADRLINA 66
            P R   P ++ AT + ++G G+LG+    A Q +G +V  ++   + P  QVA R    
Sbjct: 3   KPTRLGTPLSSSATKVMLLGSGELGKEVIIALQRLGVEVIAVDRYENAPGHQVAHRAHVI 62

Query: 67  GYDDGPALAEL--GALCAAITTEFENVSAKSLATL--AAQTFVAPAASGVSIAQDRTAEK 122
              DG ALA L        I  E E ++ ++L  L  A    V P A    +  +R   +
Sbjct: 63  NMTDGAALAALIEQEKPDLIVPEIEAIATETLVKLEEAGLARVIPTARAAWLTMNREGIR 122

Query: 123 AFFTECGSQSGVLPAPHLVINSEADIE-GLDANLLPGILKTARMGYDGKGQVRVRSIEEV 181
                 G   G+  +P+   +S  +++  +D    P ++K   M   GKGQ ++   +E+
Sbjct: 123 RL---AGETLGLATSPYRFADSLEELKAAIDQIGYPCVIKPV-MSSSGKGQSKIDGPDEI 178

Query: 182 RAA--FASMGGVT----CVLEKMLPLAYEVSVLVAR--GHDGQAVVY---PIAENVHRDG 230
            +A  +A+ GG       ++E  +   YE+++L  R    +G  V     PI  +V   G
Sbjct: 179 ESAWNYAAAGGRVDAGRVIVEGFIDFDYEITLLTVRSLNENGDTVTSFCDPIG-HVQVKG 237

Query: 231 ILFTTTVPGPNIKADAAARAQQAALQIIGALQYVGVLCIEFFVLEDGALVVNEMAPRPHN 290
               +  P P +   A  +A+  A ++   L  +G+  +E FV  D  +  +E++PRPH+
Sbjct: 238 DYVESWQPHP-MPGAALEKARDIARKVTENLGGLGLFGVELFVKGD-MVWFSEVSPRPHD 295

Query: 291 SGHYTIDACVTSQFEQQARAMARL 314
           +G  T+ + V S+FE  A+A+  L
Sbjct: 296 TGMVTMVSQVQSEFELHAKAILGL 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,164,507
Number of extensions: 45076
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 234
Number of HSP's successfully gapped: 3
Length of query: 404
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,207,925
Effective search space: 382912225
Effective search space used: 382912225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)