BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0181.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309998|ref|YP_003774090.1| hypothetical protein Hsero_0663...   382   e-107

>gi|300309998|ref|YP_003774090.1| hypothetical protein Hsero_0663
           [Herbaspirillum seropedicae SmR1]
          Length = 194

 Score =  382 bits (981), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/194 (96%), Positives = 190/194 (97%)

Query: 9   MARWPNVPHCFGWLRLDARGGWRMRDERAQQLDVPGDPIRHPALLAFIERNYDCDETGRW 68
           MARWPNVPHCFGWLRLDARGGWRMRDERAQQLD+PGDPIRHPALLAFIERNYD DETGRW
Sbjct: 1   MARWPNVPHCFGWLRLDARGGWRMRDERAQQLDLPGDPIRHPALLAFIERNYDSDETGRW 60

Query: 69  YFQNGPQRVYVDLEWMPLIARTQPGLNEALQLVLHTGAALPALEAAWMDESGRLYLQAGG 128
           YFQNGPQRVYVDLEWMPLIARTQPGLNEALQLVLHTGAALPALEAAWMDESGRLYLQAGG
Sbjct: 61  YFQNGPQRVYVDLEWMPLIARTQPGLNEALQLVLHTGAALPALEAAWMDESGRLYLQAGG 120

Query: 129 QFCGVDDRDLAQLLPCLQAGGSADEAALMAWMEGDDSVSLQFIHDAQAVPLQRIAAATLA 188
           QFCGVDDRDLAQLLPCLQAG  ADEAALMAWMEGDDSVSLQFIHDAQAVPLQRIAAA LA
Sbjct: 121 QFCGVDDRDLAQLLPCLQAGQRADEAALMAWMEGDDSVSLQFIHDAQAVPLQRIAAAALA 180

Query: 189 TRFGFVSLPRAQQD 202
           TRFGFVSLPRAQQ+
Sbjct: 181 TRFGFVSLPRAQQE 194


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 737,774
Number of extensions: 32525
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)