BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0169.p (277 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 487 e-139 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 181 8e-47 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 130 1e-31 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 102 3e-23 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 102 3e-23 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 487 bits (1254), Expect = e-139, Method: Compositional matrix adjust. Identities = 264/275 (96%), Positives = 269/275 (97%) Query: 1 MPTSTSTARTHRRGWPHDDAYRPGRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELA 60 MPTSTSTARTHRRGWPHDDAYRPGRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELA Sbjct: 1 MPTSTSTARTHRRGWPHDDAYRPGRFTGWIVPLAFLLLVEAGARLELIPARLLPPPSELA 60 Query: 61 HTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRA 120 HTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRA Sbjct: 61 HTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRA 120 Query: 121 IPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQ 180 IPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQ Sbjct: 121 IPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQ 180 Query: 181 ALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLA 240 ALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLA Sbjct: 181 ALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLA 240 Query: 241 AILILALLGKLSDGLLRQLETRSLTWRHARQHADK 275 AILILALLGKLSDGLLR +E +SL WR AR+ + + Sbjct: 241 AILILALLGKLSDGLLRAVEQKSLGWREARRQSSQ 275 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 181 bits (458), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 116/278 (41%), Positives = 162/278 (58%), Gaps = 9/278 (3%) Query: 3 TSTSTARTHRRGWPHDDA--------YRPGR-FTGWIVPLAFLLLVEAGARLELIPARLL 53 TS S R P + A ++P + GW++PL L+ E A+ + +R+L Sbjct: 2 TSASNPVAGRVAGPQEQAKPKAARKSFQPSHAWIGWLLPLLLLVWWEVAAQAGWLSSRIL 61 Query: 54 PPPSELAHTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEP 113 P P + W L+ GEL H+A S R A+GF +G+ L + LGLL G R AE LL+ Sbjct: 62 PEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAVGAGLGLILGLLSGSLRSAELLLDT 121 Query: 114 SFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGT 173 + Q +R IP+LA IPL++LW GIDET K+ L+++G FFPVYLN GIR +D LIE+ Sbjct: 122 TLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMAK 181 Query: 174 TSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESS 233 + GL+ L ++LP +LP + GLR L L W+ L+ AE I+A G+GY+ + RE Sbjct: 182 SYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFL 241 Query: 234 RPDLVLAAILILALLGKLSDGLLRQLETRSLTWRHARQ 271 + D+VL IL+ ALLGKL+D R LE L W Q Sbjct: 242 QTDVVLVGILLYALLGKLADTAARWLERFWLRWHPGYQ 279 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 130 bits (327), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 146/262 (55%), Gaps = 17/262 (6%) Query: 28 GWIVPLAFLLLVEAGARLELIPARLLPPP-------SELAHTL---------W-SLAQRG 70 G +VP+ + L E +R I ++LP P E A L W + A G Sbjct: 12 GLLVPIIVIALWEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPEAGSWLAWAFSG 71 Query: 71 ELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLAWIPLL 130 EL+ SL RV AGF+IG+ LA+ LGLL+G S+R L+ + Q +R IP +A+IPL Sbjct: 72 ELVMDAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLA 131 Query: 131 LLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGHILLPA 190 +LW G+ P + LI++GAFFPV +N +AG+R +D + G + L ++LPA Sbjct: 132 ILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPA 191 Query: 191 SLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILILALLGK 250 ++PY+ +G+R G+ A++ ++ AE+IA + G+G+ + + RE D ++A ++ + LLG Sbjct: 192 AVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGL 251 Query: 251 LSDGLLRQLETRSLTWRHARQH 272 D + +L L W ++ Sbjct: 252 AIDLGMSRLNNYMLRWHRGLEN 273 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 102 bits (254), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 4/224 (1%) Query: 48 IPARLLPPPSELAHTLWSLAQRG----ELLPHIAASLARVAAGFVIGSALAVALGLLVGI 103 +P LP P+E+ S+ + G L H+ ASL R+ VI L + +GLL+G+ Sbjct: 67 VPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPVGLLMGL 126 Query: 104 SRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRD 163 +R + +L+ + +P LA++PL+++WLGI E K+ L+ + F PV L+ AG+R Sbjct: 127 NRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRS 186 Query: 164 IDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVG 223 + + + + G L+ ++LP++LP + G+R L + W LVAAELIA+ +G+G Sbjct: 187 LPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAELIASNRGIG 246 Query: 224 YLLSDGRESSRPDLVLAAILILALLGKLSDGLLRQLETRSLTWR 267 Y++ D V I ++A +R LE + W+ Sbjct: 247 YMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERALVPWK 290 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 102 bits (254), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 63/203 (31%), Positives = 111/203 (54%), Gaps = 1/203 (0%) Query: 66 LAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRAEALLEPSFQALRAIPSLA 125 L G L + AS R+ AG+ G + V LG+ +G LL+P + R IP +A Sbjct: 54 LISDGTLQQSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIA 113 Query: 126 WIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHKLIEVGTTSGLNTQALIGH 185 ++ L ++WLG E K+ LI F V LN +AG++ ++ + + G ++ Sbjct: 114 FVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILST 173 Query: 186 ILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLSDGRESSRPDLVLAAILIL 245 ++LP+++P++ G R + +++ +V+AE+++A +G+G L+ R SR + V I+ L Sbjct: 174 VILPSTVPFMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIAL 233 Query: 246 ALLGKLSDGLLRQLETRSLTWRH 268 +LG L D +LR + TR L R+ Sbjct: 234 GILGYLFDRVLR-VATRKLLARY 255 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.140 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 748,159 Number of extensions: 28005 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 173 Number of HSP's successfully gapped: 16 Length of query: 277 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 193 Effective length of database: 1,222,130 Effective search space: 235871090 Effective search space used: 235871090 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)