BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0167.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309983|ref|YP_003774075.1| transmembrane protein [Herbaspi...   486   e-139
gi|300313191|ref|YP_003777283.1| transmembrane protein [Herbaspi...   291   6e-80

>gi|300309983|ref|YP_003774075.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score =  486 bits (1252), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 242/242 (100%), Positives = 242/242 (100%)

Query: 76  MWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAIMFVVRMFRRKSEASQ 135
           MWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAIMFVVRMFRRKSEASQ
Sbjct: 1   MWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVALIALAIMFVVRMFRRKSEASQ 60

Query: 136 PAPAWAGAAPQAADNASATPQIGSMLKTDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFD 195
           PAPAWAGAAPQAADNASATPQIGSMLKTDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFD
Sbjct: 61  PAPAWAGAAPQAADNASATPQIGSMLKTDQSAAAATQGGFGGGFGNAEQAPAYGVPAGFD 120

Query: 196 TVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAASNQTDVVSLDA 255
           TVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAASNQTDVVSLDA
Sbjct: 121 TVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEMFAELRLQIQERGAASNQTDVVSLDA 180

Query: 256 EVLGVETVGNDYLASVKFFGFIKEDPTASPAQFAEIWNLSKPAAGQGGWVLAGIQQIDPV 315
           EVLGVETVGNDYLASVKFFGFIKEDPTASPAQFAEIWNLSKPAAGQGGWVLAGIQQIDPV
Sbjct: 181 EVLGVETVGNDYLASVKFFGFIKEDPTASPAQFAEIWNLSKPAAGQGGWVLAGIQQIDPV 240

Query: 316 SA 317
           SA
Sbjct: 241 SA 242


>gi|300313191|ref|YP_003777283.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  291 bits (744), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 181/320 (56%), Positives = 225/320 (70%), Gaps = 11/320 (3%)

Query: 1   MKKAFVALIVAVMTLSVGISTVEAKRLGGGGSIGKQSSSASRQA-QSPAPMQQNQAAAAK 59
           MKK  +AL++++ +LS+ +S  EAKRLGGGGS GKQSS+ SRQA  S     Q  A   +
Sbjct: 1   MKKLLLALLLSITSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSSPSYSQPSATPYR 60

Query: 60  PAAPAA----APAAAAAKPSMWKGLLGGALLGLGLGALLSHFGLGGALASMISTILTVAL 115
           P+ PAA    AP    A P  W+ +LGGALLG GLGAL+SHFG+GGA+  ++ ++LT+AL
Sbjct: 61  PSTPAATLQSAPMPKPASP--WRNVLGGALLGFGLGALMSHFGIGGAMGGLLGSLLTIAL 118

Query: 116 IALAIMFVVRMFRRKSEASQPAPAWAGAAPQAA---DNASATPQIGSMLKTDQSAAAATQ 172
           +  A++F++RMF R  EA    PA+A   P  +     A ATP+IGS L+ D +   A Q
Sbjct: 119 LCAAVIFLIRMFARGREAQNNNPAYATPMPGVSPIGSAAGATPEIGSGLR-DINPPPALQ 177

Query: 173 GGFGGGFGNAEQAPAYGVPAGFDTVGFVRNAKTYFIRLQAAWDKADINDIREFTTPEMFA 232
           G   G      Q   +G+P GFDT GFVRNAKTYFIRLQAAWD+AD+NDIREFTTPEMFA
Sbjct: 178 GNAYGAAAQPAQIQQWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIREFTTPEMFA 237

Query: 233 ELRLQIQERGAASNQTDVVSLDAEVLGVETVGNDYLASVKFFGFIKEDPTASPAQFAEIW 292
           ELR+Q+ ERGAA N TDVV LDA++LG+ET+  DYLA+V+F G IKE P  S   FAEIW
Sbjct: 238 ELRMQLTERGAAPNATDVVQLDAQLLGIETMAFDYLATVRFQGLIKEAPDVSAEPFAEIW 297

Query: 293 NLSKPAAGQGGWVLAGIQQI 312
           NLSKP  G GGWVLAGIQQ+
Sbjct: 298 NLSKPLNGSGGWVLAGIQQV 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.129    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 581,750
Number of extensions: 18653
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)