BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0165.p (237 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309981|ref|YP_003774073.1| two component response regulato... 469 e-134 gi|300313818|ref|YP_003777910.1| two component transcription reg... 205 3e-54 gi|300312680|ref|YP_003776772.1| two component response regulato... 204 6e-54 gi|300313680|ref|YP_003777772.1| two component response regulato... 187 5e-49 gi|300311842|ref|YP_003775934.1| response regulator transcriptio... 177 8e-46 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 469 bits (1208), Expect = e-134, Method: Compositional matrix adjust. Identities = 237/237 (100%), Positives = 237/237 (100%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 Query: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE Sbjct: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 Query: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEKLPEAGNAAALAASNNAA 237 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEKLPEAGNAAALAASNNAA Sbjct: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEKLPEAGNAAALAASNNAA 237 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 205 bits (521), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 110/222 (49%), Positives = 145/222 (65%), Gaps = 3/222 (1%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRILL ED L+ L +++R + +C NG +ADS L TQD+ L+ILDL LP+M G+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 EVL+R+RAR +R PVLILTA + RV GL++GADDY+AKPF L ELEARV+AL RR Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 + G LS+D V R G ++L L+ RE +LE L+ R G V KE+L + Sbjct: 121 NNEAVTVSCGALSFDTVSRTFTYGGELLALTPREHAVLEALIVRHGHTVPKEKLFQQVFT 180 Query: 181 WGEEVSNNAIEVYVHRLRKKIE---VGGVRIATVRGLGYCLE 219 + S +AIE+Y+HRLRKK+E G V I T+RGLGY L+ Sbjct: 181 LEDNASMDAIEIYIHRLRKKLEHEGPGRVGITTLRGLGYLLQ 222 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 204 bits (518), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 111/222 (50%), Positives = 145/222 (65%), Gaps = 7/222 (3%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFD--LLILDLGLPKMS 58 M +LL EDD VL DGL+R L G+ V NG +A S Q F+ +L+LD+GLP + Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS----QRFNAAVLVLDIGLPGID 56 Query: 59 GLEVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRR 118 G EVLRR+RA + PVL+LTA D++ RV GL+LGADDY+ KPFA EL AR++AL RR Sbjct: 57 GFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARIKALIRR 116 Query: 119 GAGGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHL 178 A P + G LS D + A I + +ELS RE +LE L+Q R+VSK+Q++D + Sbjct: 117 SA-PQPAQLTVGGLSLDNATKRADIDGRKIELSLREWTVLEYLMQHASRVVSKQQIIDAV 175 Query: 179 CEWGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCLEK 220 WGE+ + NA+EVYV R+R KI GV I T+RG GY LEK Sbjct: 176 LPWGEDFTINAVEVYVSRIRLKIADSGVAIRTIRGFGYMLEK 217 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 187 bits (476), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 99/218 (45%), Positives = 142/218 (65%), Gaps = 2/218 (0%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MR+LL EDD ++ + + + LR G+A D V++G AD AL T+D+ +L+LDLGLP+ GL Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 VLR LR R + +PVLI TA D+V RV GLD GADDY+ KPF L EL AR+RAL+RR A Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSRRQA 120 Query: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 G ++++ + + + + + LSARE LL+ + R G ++S+ QL + L Sbjct: 121 GRAESLVQVREVILNPATHEVTVSGKPVNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYG 180 Query: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGYCL 218 W + + +NA+EV++H LRKK VG I VRG+GY + Sbjct: 181 WDDSIESNAVEVHIHALRKK--VGSDFIKNVRGVGYLV 216 >gi|300311842|ref|YP_003775934.1| response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 239 Score = 177 bits (449), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 101/237 (42%), Positives = 140/237 (59%), Gaps = 3/237 (1%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRILL ED + +A+ + L G+ + NG A LS + +DLLILD+ LP+ G Sbjct: 1 MRILLVEDTADVAEAIVTHLNRIGHTVEWESNGAHASRRLS-ESYDLLILDVMLPQQDGF 59 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTRRGA 120 +L++LR R PVL+LTA VE+RV+ LDLGADDY+ KPF EL+AR+R L RR Sbjct: 60 SLLQQLRTRGHHTPVLMLTACAEVEERVRALDLGADDYLVKPFDFRELDARIRVLLRRSG 119 Query: 121 GGGPTVIRHGPLSYDQVGRIAYIGEQMLELSARELGLLEVLLQRTGRLVSKEQLVDHLCE 180 G ++ LS D+ R A + Q +EL+ RE+ LLE++ R GR+ +K++L+D L Sbjct: 120 GESTNLLHCANLSIDRKSRSATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 Query: 181 WGEEVSNNAIEVYVHRLRKKIEVGGVRIATVRGLGY--CLEKLPEAGNAAALAASNN 235 + S N++E YV RLRKK+ I T+RGLGY L E G A AA + Sbjct: 180 VDDNPSANSVEQYVARLRKKLAAAAFEIRTLRGLGYQLVLHAPAEPGAGAGTAAHTS 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 682,493 Number of extensions: 27952 Number of successful extensions: 250 Number of sequences better than 1.0e-08: 46 Number of HSP's gapped: 223 Number of HSP's successfully gapped: 46 Length of query: 237 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 155 Effective length of database: 1,231,600 Effective search space: 190898000 Effective search space used: 190898000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)