BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0164.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 776 0.0 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 308 8e-85 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 237 1e-63 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 219 6e-58 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 213 3e-56 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 776 bits (2004), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/390 (99%), Positives = 387/390 (99%), Gaps = 2/390 (0%) Query: 135 MPQPPPDEDRSTVGTVQFRNDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGET 194 MPQPPPDEDRSTVGTVQFRNDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGET Sbjct: 1 MPQPPPDEDRSTVGTVQFRNDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGET 60 Query: 195 LEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPID 254 LEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPID Sbjct: 61 LEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPID 120 Query: 255 SGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQ 314 SGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQ Sbjct: 121 SGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQ 180 Query: 315 VDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMS 374 VDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMS Sbjct: 181 VDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMS 240 Query: 375 FTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGL 434 FTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGL Sbjct: 241 FTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGL 300 Query: 435 AILEVEDNGPGIPVAERANVFERFYRILGTPSTGS--GLGLAIVREIAQQHEAVLEITSN 492 AILEVEDNGPGIPVAERANVFERFYRILGTPSTGS GLGLAIVREIAQQHEA LEITSN Sbjct: 301 AILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLGLAIVREIAQQHEAALEITSN 360 Query: 493 PRSTDPKYPGCVFRVSFRMMPRTPFFDDIT 522 PRSTDPKYPGCVFRVSFRMMPRTPFFDDIT Sbjct: 361 PRSTDPKYPGCVFRVSFRMMPRTPFFDDIT 390 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 308 bits (788), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 190/483 (39%), Positives = 283/483 (58%), Gaps = 25/483 (5%) Query: 39 SLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGKVV 98 SL +++ W+L PL LL + Y A +A+ +DR+L S LA++VS V+G V Sbjct: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 Query: 99 ARLPVSARDLLRADDIDNIYYKVTGPAGEYIEGDVDMPQPPPDEDRSTV--GTVQFRNDI 156 A +P A D D++ IYYKVTG GE + G D+P PPD RS V V+F Sbjct: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 Query: 157 LHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGETLEKRAQLANEIIKGVILPQFII 216 H VRIA L + + + +A +QVGET+E R + +I+ + Q + Sbjct: 130 YHDQPVRIAALLQPVYDDSIRG-------IALIQVGETMEGRNGMTRKILFDTLWRQGTL 182 Query: 217 LPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARL 276 + VA LVWFA+ L PL +L+ + +R P DLS D+ V +E+ PLV+++N + RL Sbjct: 183 VTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGRL 242 Query: 277 SQTIAIQKRFIADAAHQMKTPLAGMRMQSELALR-----QDDQVDVRRSLEQLAKSSETA 331 I+ Q+RFIADA+HQ++TPL ++ QSEL LR Q D ++R +E +A++++ A Sbjct: 243 QALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDAA 302 Query: 332 TRLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPIL 391 L N+LL+LARAE+ ++ GG +P+ L++ AR V + + ++ I L FE+ + + Sbjct: 303 VHLANRLLTLARAEHGAAE-GGTMPLSLSDAARQVALELSQQAVSREIGLAFEE-EGDVS 360 Query: 392 ITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGG-GLAILEVEDNGPGIPVAE 450 I N ++L EL+ NLLDNA+ YTP G+ + VRA++ G +A+LEVED+GPGIP AE Sbjct: 361 IEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAAE 420 Query: 451 RANVFERFYRILGTPST---GSGLGLAIVREIAQQHEAVLEITSNPRSTDPKYPGCVFRV 507 R VFE FYR T G+GLGL+IVREIA H A + + + + + G V R+ Sbjct: 421 REKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTLDAPAQGS-----GLVVRI 475 Query: 508 SFR 510 F+ Sbjct: 476 VFQ 478 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 237 bits (605), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 161/481 (33%), Positives = 249/481 (51%), Gaps = 31/481 (6%) Query: 36 IQRSLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNG 95 + S+ ++L W++APLLL+ + +TY +A A FD+ L DS L QV Sbjct: 4 MHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQE 63 Query: 96 KVVARLPVSARDLLRADDIDNIYYKVTGPAGEYIEGDVDMPQPPPDE--DRSTVGTVQFR 153 + A L A +LR++ D ++ V G+ + GD PQ P + DR + R Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMR 123 Query: 154 NDILHGSDVRIATLQVDLRRSAAQRAASREPRLATVQVGETLEKRAQLANEIIKGVILPQ 213 G VRIA +QV ++ + V V ET+ KR + I+ ++ Sbjct: 124 -----GEPVRIAAMQVRVKNG-----------VIWVAVAETIRKRDRAHYTILLSFLVLD 167 Query: 214 FIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDML 273 + ++ +V A+ RGL PL LQ+ + R L ID P E+ PL+ ++N+++ Sbjct: 168 GALTFASIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELM 227 Query: 274 ARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELAL-RQDDQVDVRRSLEQLAKSSETAT 332 AR+++ Q+ F+AD AHQ++TPL G+++Q EL + DQ D RSL + S E Sbjct: 228 ARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMI 287 Query: 333 RLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILI 392 R QLL+LAR+E +S + + L++L VQ ++ + +RIDLGF+ P + Sbjct: 288 RQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDL--RPARL 345 Query: 393 TGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERA 452 G+ +L +L+ NL+DNA+ Y+P +G VTVR ++ +L VED+GPGI R Sbjct: 346 RGDRFLLSDLIDNLIDNAVRYSP--PHGTVTVRCLEEQDA--TVLSVEDSGPGIAPEHRE 401 Query: 453 NVFERFYRILGTPSTGSGLGLAIVREIAQQHEAVLEITSNPRSTDPKYPGCVFRVSFRMM 512 +F+RFYR GSGLGLAIVREIA H V+ + + G +F V F + Sbjct: 402 LIFDRFYRA-NDKVAGSGLGLAIVREIAHDHGGVISVDCKEQGQ-----GTIFTVRFPLA 455 Query: 513 P 513 P Sbjct: 456 P 456 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 219 bits (557), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 148/441 (33%), Positives = 232/441 (52%), Gaps = 19/441 (4%) Query: 51 PLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGKVVARLPVSARDLLR 110 P+ + +S + Y A S A DRAL S ++A QV +G V +P +A +L Sbjct: 16 PMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELFA 75 Query: 111 ADDIDNIYYKVTGPAGEYIEGDVDMPQPPPDEDRSTVGTVQFRNDILHGSDVRIATLQVD 170 + D +YY+V + G D P P D + + V + +G +R+ + Sbjct: 76 SPAQDAVYYQVLMDDDTLLAGRPDFPAAP---DFAALYPV-YSTTSFNGKPLRVVSYI-- 129 Query: 171 LRRSAAQRAASREP--RLATVQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFAL 228 RA E R+ V VG+T++ R ++ ++ + Q ++L +A++LV L Sbjct: 130 -------RALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGL 182 Query: 229 SRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIA 288 + L PL L+ + RRPD L+P+ +G + +E+ P+V ++N + RL+ + +QKRF+A Sbjct: 183 TMELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVA 242 Query: 289 DAAHQMKTPLAGMRMQSELALRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQ 348 DAAHQ++TPLA + Q + A + DD V + L L + S + T L N+LL L++AE Sbjct: 243 DAAHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASD 302 Query: 349 SQSGGMIPVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLD 408 S + PV+L ++ V+++ ++ + IDLG E ++ GN L +L NL+D Sbjct: 303 SSAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLID 362 Query: 409 NALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERANVFERFYRILGTPSTG 468 NAL YTP G V + + + I+ V DNGPGIP R VFERFYR G Sbjct: 363 NALRYTPEGGKVTVGLEKKRSQ----MIITVSDNGPGIPAEVRERVFERFYRNAAPDQPG 418 Query: 469 SGLGLAIVREIAQQHEAVLEI 489 SGLGLAIVREI Q + + + Sbjct: 419 SGLGLAIVREIVQASQGSIRL 439 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 213 bits (543), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 148/456 (32%), Positives = 235/456 (51%), Gaps = 23/456 (5%) Query: 37 QRSLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGK 96 +RS+ +L W+++P+ L + Y N +DR L SV + + NG+ Sbjct: 8 RRSVRAYLLAWIISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENGE 67 Query: 97 VVARLPVSARDLLRADDIDNIYYKVTGPAGEYIEGDVDMPQPPPDEDRSTV--GTVQFRN 154 + A LP +A ++ AD + Y++ G G++ +GD D+P D+ + Sbjct: 68 LKASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIYE 127 Query: 155 DILHGSDVRIATLQVDLRRSAAQRAASREPR-LATVQVGETLEKRAQLANEIIKGVILPQ 213 D +G VR+A L Q + +PR A VQV ET+E R+ LA +I ++ Q Sbjct: 128 DTYNGVPVRVAAL--------FQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIRQ 179 Query: 214 FIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDML 273 +L V +++ + + R L P+ L++++ R DDLSP+ P E+ P + +LN ++ Sbjct: 180 AALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQLM 239 Query: 274 ARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDDQVDVRRSLEQLAKSSETATR 333 ARL + + Q+RF+A+A+HQ++TPLA ++ Q + LR D V ++++ + E AT Sbjct: 240 ARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPV--IWQEMSGTVERATT 297 Query: 334 LVNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPMSFTQRIDLGFEQPDHPILIT 393 L NQLLSLA+ E Q G +L LAR D P+ + DL FE IL+ Sbjct: 298 LANQLLSLAKVE-QIRGRGAQEVCDLGMLARETAVDLSPLIAEK--DLDFELEAEKILVM 354 Query: 394 GNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAERAN 453 G+P M+ EL+SNLL NA+ +TP G + + AR D +A L + D+G GI N Sbjct: 355 GHPWMIGELISNLLHNAIRHTPAQGRLGIRITARED----VAELLIWDSGEGIDDQAMEN 410 Query: 454 VFERFYRILGTPSTGSGLGLAIVREIAQQHEAVLEI 489 VF+ F S+ GLGL I EI +A + + Sbjct: 411 VFKAFS---SNVSSAGGLGLTICGEIVDSMQATISL 443 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,433,127 Number of extensions: 56540 Number of successful extensions: 342 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 289 Number of HSP's successfully gapped: 34 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)