BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0161.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine prote...   639   0.0  
gi|300309975|ref|YP_003774067.1| transglutaminase-like superfami...    74   1e-14

>gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/311 (98%), Positives = 309/311 (99%)

Query: 1   MSERHIYRIHHQTTYQYALPVRLSHQVLHLTPRELPWQACLSHTVNIFPQPQLVRSYEDN 60
           MS+RH+YRIHHQTTYQYALPVRLSHQVLHLTPRELPWQACLSHTVNI PQPQLVRSYEDN
Sbjct: 1   MSDRHVYRIHHQTTYQYALPVRLSHQVLHLTPRELPWQACLSHTVNILPQPQLVRSYEDN 60

Query: 61  FGNIIKAFSLDTDHTSLDVQADSWVALSARGQPQAQMAWDEAAMQMAYHGGRVMTPGMLE 120
           FGNIIKAFSLDTDHTSLDVQADSWVALSARGQPQAQMAWDEAAMQMAYHGGRVM PGMLE
Sbjct: 61  FGNIIKAFSLDTDHTSLDVQADSWVALSARGQPQAQMAWDEAAMQMAYHGGRVMMPGMLE 120

Query: 121 ASNFLFESSHVRIKREFIRYAAECFGPGVSVLEGVRTLMLRIHEEFAFDPAATTVSTPVT 180
           ASNFLFESSHVRIKREFIRYAAECFGPGVSVLEGVRTLMLRIHEEFAFDPAATTVSTPVT
Sbjct: 121 ASNFLFESSHVRIKREFIRYAAECFGPGVSVLEGVRTLMLRIHEEFAFDPAATTVSTPVT 180

Query: 181 EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQPRLIGADASHAWVSVYC 240
           EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQPRLIGADASHAWVSVYC
Sbjct: 181 EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLLTEPPPGQPRLIGADASHAWVSVYC 240

Query: 241 PGVNGAEGSWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVLIGGGQQSMQVAVTVLP 300
           PGVNGAEGSWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVLIGGGQQSMQVAVTVLP
Sbjct: 241 PGVNGAEGSWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVLIGGGQQSMQVAVTVLP 300

Query: 301 AEEAQGLQLSI 311
           AEEAQGLQLSI
Sbjct: 301 AEEAQGLQLSI 311


>gi|300309975|ref|YP_003774067.1| transglutaminase-like superfamily
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1128

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 118/294 (40%), Gaps = 43/294 (14%)

Query: 9   IHHQTTYQYALPVRLSHQVLHLTPRELPWQACLSHTVNIFPQPQLVRSYEDNFGNIIKAF 68
           ++H T+Y+Y   + L  QV+ L P        LS+++ + P+P  +   +D   N +   
Sbjct: 7   LNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPESNYLARL 66

Query: 69  SLDTDHTSLDVQADSWVALSARG------QPQAQM-----AWDEAAMQMAYHGGRVMTPG 117
                 T   ++ D    +S         +P A+      A D     + Y     ++P 
Sbjct: 67  VFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFDYAEDLQNELLPYRQKLPLSP- 125

Query: 118 MLEASNFLFESSHVRIKREFIRYAAECFGPGVSVLEGVRTLMLRIHEEFAFDPAATTVST 177
                  LF      I RE +       G    ++   + L   I      +P    V T
Sbjct: 126 -------LFAQFLQSIPREKV-------GSANFLVALNQKLANHIGYTIRMEPG---VQT 168

Query: 178 PVTEVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLL-------TEPPPGQPRLIGAD 230
           P  E    + G C+D + L++  LR +GLAAR+VSGYL+       +   P  P     D
Sbjct: 169 P-EETLELKSGSCRDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTD 227

Query: 231 ASHAWVSVYCPGVNGAEGSWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVL 284
             HAW  VY PG       W+  DPT+G+F    HI L    +    +P+ G++
Sbjct: 228 L-HAWCEVYLPG-----AGWVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLV 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,084,591
Number of extensions: 47348
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)