BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0160.p (833 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641... 1700 0.0 gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636... 274 2e-74 gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635... 60 5e-10 >gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641 [Herbaspirillum seropedicae SmR1] Length = 833 Score = 1700 bits (4403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 832/833 (99%), Positives = 832/833 (99%) Query: 1 MHQRLLESYPVASDRYDEMLAADGRLRPHWRTLIDQLENLSPDMLRRRANEVRDAIASDG 60 M QRLLESYPVASDRYDEMLAADGRLRPHWRTLIDQLENLSPDMLRRRANEVRDAIASDG Sbjct: 1 MPQRLLESYPVASDRYDEMLAADGRLRPHWRTLIDQLENLSPDMLRRRANEVRDAIASDG 60 Query: 61 VTYNVYADPKGANRPWELDLLPHLVSSEEWDFLERAVGQRARLMNGLLSDIYGPQTLIAE 120 VTYNVYADPKGANRPWELDLLPHLVSSEEWDFLERAVGQRARLMNGLLSDIYGPQTLIAE Sbjct: 61 VTYNVYADPKGANRPWELDLLPHLVSSEEWDFLERAVGQRARLMNGLLSDIYGPQTLIAE 120 Query: 121 GLLPPALVFGQHGYLMPCHGWQPPGGVHLHAYAIDLARSVDGTWWVVSDRTQGPSGTGYA 180 GLLPPALVFGQHGYLMPCHGWQPPGGVHLHAYAIDLARSVDGTWWVVSDRTQGPSGTGYA Sbjct: 121 GLLPPALVFGQHGYLMPCHGWQPPGGVHLHAYAIDLARSVDGTWWVVSDRTQGPSGTGYA 180 Query: 181 LQNRQIMARAMPEALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYS 240 LQNRQIMARAMPEALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYS Sbjct: 181 LQNRQIMARAMPEALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYS 240 Query: 241 EHAFLAHTLGFPLVEGVDLTVRGEQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSAL 300 EHAFLAHTLGFPLVEGVDLTVRGEQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSAL Sbjct: 241 EHAFLAHTLGFPLVEGVDLTVRGEQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSAL 300 Query: 301 GVPGLTQAARLGNVLIANSLGSGVLESTALHGFLPAINERLYGEPLLLPSVASWWCGEKP 360 GVPGLTQAARLGNVLIANSLGSGVLESTALHGFLPAINERLYGEPLLLPSVASWWCGEKP Sbjct: 301 GVPGLTQAARLGNVLIANSLGSGVLESTALHGFLPAINERLYGEPLLLPSVASWWCGEKP 360 Query: 361 ALDYTLAHFDELVIVPAFSSMRMQPVFGHSVTGAARRRLIESLQLQPHAYAAQEWVRLSQ 420 ALDYTLAHFDELVIVPAFSSMRMQPVFGHSVTGAARRRLIESLQLQPHAYAAQEWVRLSQ Sbjct: 361 ALDYTLAHFDELVIVPAFSSMRMQPVFGHSVTGAARRRLIESLQLQPHAYAAQEWVRLSQ 420 Query: 421 APVMSRSGDYRLMNRTISLRVFAVADGEGGYQVMPGGLTRVAPRQRRDVVSMQQGGTSKD 480 APVMSRSGDYRLMNRTISLRVFAVADGEGGYQVMPGGLTRVAPRQRRDVVSMQQGGTSKD Sbjct: 421 APVMSRSGDYRLMNRTISLRVFAVADGEGGYQVMPGGLTRVAPRQRRDVVSMQQGGTSKD 480 Query: 481 VWVLREEDRLEAHDAPEGHGAENVTLIKGTVDVSSHSGENLFWMGRYSERVKNLARLLRT 540 VWVLREEDRLEAHDAPEGHGAENVTLIKGTVDVSSHSGENLFWMGRYSERVKNLARLLRT Sbjct: 481 VWVLREEDRLEAHDAPEGHGAENVTLIKGTVDVSSHSGENLFWMGRYSERVKNLARLLRT 540 Query: 541 TLQYTMDGQTESRGMLGSVSWICSQLGVQMPKSDPRPTITGLQQSLQAAVVDPSAPVSVA 600 TLQYTMDGQTESRGMLGSVSWICSQLGVQMPKSDPRPTITGLQQSLQAAVVDPSAPVSVA Sbjct: 541 TLQYTMDGQTESRGMLGSVSWICSQLGVQMPKSDPRPTITGLQQSLQAAVVDPSAPVSVA 600 Query: 601 TQLRQLANAAYQVREHLSLDNWHALTKMPAMVQERINTPAAAQHVLGNVIDACSGLAGHA 660 TQLRQLANAAYQVREHLSLDNWHALTKMPAMVQERINTPAAAQHVLGNVIDACSGLAGHA Sbjct: 601 TQLRQLANAAYQVREHLSLDNWHALTKMPAMVQERINTPAAAQHVLGNVIDACSGLAGHA 660 Query: 661 LDDMTRDAGWQFLMVGRHIERMANMAALFDNFLRLPPQRQTAALSWLLEAASSIVTYRVR 720 LDDMTRDAGWQFLMVGRHIERMANMAALFDNFLRLPPQRQTAALSWLLEAASSIVTYRVR Sbjct: 661 LDDMTRDAGWQFLMVGRHIERMANMAALFDNFLRLPPQRQTAALSWLLEAASSIVTYRVR 720 Query: 721 YRRTPEWLPVLHLLVFDVSNPHGMAYQFRMLQQYMSEIAQQLGLLSMTIPTHLSSQLEAM 780 YRRTPEWLPVLHLLVFDVSNPHGMAYQFRMLQQYMSEIAQQLGLLSMTIPTHLSSQLEAM Sbjct: 721 YRRTPEWLPVLHLLVFDVSNPHGMAYQFRMLQQYMSEIAQQLGLLSMTIPTHLSSQLEAM 780 Query: 781 NLSEFAHEHPNVEQANARLTQLMRDAVSGGYMLSDDLSRHYFTPLTAPVSQGV 833 NLSEFAHEHPNVEQANARLTQLMRDAVSGGYMLSDDLSRHYFTPLTAPVSQGV Sbjct: 781 NLSEFAHEHPNVEQANARLTQLMRDAVSGGYMLSDDLSRHYFTPLTAPVSQGV 833 >gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636 [Herbaspirillum seropedicae SmR1] Length = 475 Score = 274 bits (701), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/482 (33%), Positives = 252/482 (52%), Gaps = 22/482 (4%) Query: 16 YDEMLAAD-----GRLRPHWRTLIDQLENLSPDMLRRRANEVRDAIASDGVTYNVYADPK 70 +DEM + + ++R H+ + L S + + R+ E G+T+ VY + Sbjct: 5 FDEMYSGESHGNEAQVRQHYAEFANWLSAQSAETIARKRAESDLIFRRVGITFAVYGNDA 64 Query: 71 GANRPWELDLLPHLVSSEEWDFLERAVGQRARLMNGLLSDIYGPQTLIAEGLLPPALVFG 130 G R D++P ++ EW LE + QR R +N + DIY Q ++ G++PP +F Sbjct: 65 GTERLIPFDIIPRIIHKAEWARLEAGLVQRVRALNMFIHDIYHEQKIVKAGIIPPEQIFQ 124 Query: 131 QHGYLMPCHGWQPPGGVHLHAYAIDLARSVDGTWWVVSDRTQGPSGTGYALQNRQIMARA 190 Y ++ H +D+ R+ +G ++V+ D + PSG Y L+NR++M R Sbjct: 125 NAQYRREMQDVNVVNDIYAHIAGVDIVRAGEGEFYVLEDNLRVPSGVSYMLENRKMMMRL 184 Query: 191 MPEALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYSEHAFLAHTLG 250 P+ + Y L L +APA P +V++TPG YN Y EHAFLA +G Sbjct: 185 FPDLFTRHKIAPVDHYPDLLLDNLRSVAPAGVTDPTVVVMTPGMYNSAYFEHAFLAQQMG 244 Query: 251 FPLVEGVDLTVRGEQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSALGVPGLTQAAR 310 LVEG DL V+ V+++T G +RV I RR+DDD+ DPL R DSALGVPGL QA R Sbjct: 245 VELVEGQDLFVKDNVVYMRTTRGPKRVDVIYRRIDDDFLDPLAFRPDSALGVPGLLQAYR 304 Query: 311 LGNVLIANSLGSGVLESTALHGFLPAINERLYGEPLLLPSVASWWCGEKPALDYTLAHFD 370 G V + N++G+GV + +++ ++P + E +L +V ++ C +K L YTLA+ + Sbjct: 305 AGKVTLTNAIGTGVADDKSIYPYVPDMVRFYLSEDPILNNVPTYQCRKKEDLSYTLANLE 364 Query: 371 ELVIVPAFSSMRMQPVFGHSVTGAARRRLIESLQ----LQPHAYAAQEWVRLSQAPVMSR 426 +LV+ + +G V A+ R+ IE + +P Y AQ + LS P Sbjct: 365 KLVV----KEVHGAGGYGMLVGPASTRQEIEDFRARIIAKPDGYIAQPTLALSVCPTYVE 420 Query: 427 SGDYRLMNRTISLRVFAVADGEGGYQV--MPGGLTRVAPRQRRDVVSMQQGGTSKDVWVL 484 SG + R + LR F ++ G Q+ + GGLTRVA ++ VV+ QGG +KD W+L Sbjct: 421 SG---IAPRHLDLRPFVLS----GKQITMVKGGLTRVALKEGSLVVNSSQGGGTKDTWIL 473 Query: 485 RE 486 + Sbjct: 474 EK 475 >gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635 [Herbaspirillum seropedicae SmR1] Length = 333 Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 17/185 (9%) Query: 515 SHSGENLFWMGRYSERVKNLARLL----RTTL--QYTMDGQTESRGMLGSVSWICSQLGV 568 S + ++LFWM RY+ER +N AR+L +T L Q T D + R +LG +S + Sbjct: 3 SRTADHLFWMARYTERAENTARMLDVHVQTALLPQSTDDAEQGWRAVLG-ISELLYGYNQ 61 Query: 569 QMPKSDPRPTITGLQQSLQAAVVDPSAPVSVATQLRQLANAAYQVREHLSLDNWHALTKM 628 + K + I + V DP+ P S+A+ LRQ A VR L+ + W Sbjct: 62 KYDKLTQKDVIDFM-------VRDPNNPSSIASCLRQARENARAVRGALTTEAWEIQNAT 114 Query: 629 PAMVQERINTPAAAQH--VLGNVIDACSGLA-GHALDDMTRDAGWQFLMVGRHIERMANM 685 +Q + T A Q+ + S L+ G + M D + F+ +G +ER N Sbjct: 115 WIKMQSYLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTMLEDEAFHFIRLGTFLERADNT 174 Query: 686 AALFD 690 A + D Sbjct: 175 ARIID 179 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,745,032 Number of extensions: 119921 Number of successful extensions: 361 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 357 Number of HSP's successfully gapped: 3 Length of query: 833 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 740 Effective length of database: 1,179,515 Effective search space: 872841100 Effective search space used: 872841100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)