BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0158.p (1128 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309975|ref|YP_003774067.1| transglutaminase-like superfami... 2308 0.0 gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine prote... 76 2e-14 >gi|300309975|ref|YP_003774067.1| transglutaminase-like superfamily domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1128 Score = 2308 bits (5982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1115/1128 (98%), Positives = 1120/1128 (99%) Query: 1 MSIHVALNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPES 60 MSIHVALNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPES Sbjct: 1 MSIHVALNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPES 60 Query: 61 NYLARLVFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFDYAEDLQNELLPYRQK 120 NYLARLVFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFDYAEDLQNELLPYRQK Sbjct: 61 NYLARLVFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFDYAEDLQNELLPYRQK 120 Query: 121 LPLSPLFAQFLQSIPREKVGSANFLVALNQKLANHIGYTIRMEPGVQTPEETLELKSGSC 180 LPLSPLFAQFLQSIPREKVGSANFLVALNQKLANHIGYTIRMEPGVQTPEETLELKSGSC Sbjct: 121 LPLSPLFAQFLQSIPREKVGSANFLVALNQKLANHIGYTIRMEPGVQTPEETLELKSGSC 180 Query: 181 RDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDLHAWCEVYLPGAG 240 RDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDLHAWCEVYLPGAG Sbjct: 181 RDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDLHAWCEVYLPGAG 240 Query: 241 WVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLVDPCEVEFEHLMSVKRIWEAPRVTKP 300 WVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLVDPCEVEFEHLMSVKRIWEAPRVTKP Sbjct: 241 WVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLVDPCEVEFEHLMSVKRIWEAPRVTKP 300 Query: 301 YTEEQWADIEKLGHAIDADLHANDVRLTMGGEPTFVSLDHPDEPEWNTAAMGPTKKPLAA 360 YTEEQWADIEKLGHAIDADLHANDVRLTMGGEPTFVSLDHPDEPEWNTAAMGPTKKPLAA Sbjct: 301 YTEEQWADIEKLGHAIDADLHANDVRLTMGGEPTFVSLDHPDEPEWNTAAMGPTKKPLAA 360 Query: 361 ELYHRMRNKYAAQGLPHFGQGKWYPGEQLPRWALNCYWRRDGEPIWLNPALIGDETRPNV 420 ELYHRMRNKYAAQGLPHFGQGKWYPGEQLPRWALNCYWRRDGEPIWLNPALIGDETRPNV Sbjct: 361 ELYHRMRNKYAAQGLPHFGQGKWYPGEQLPRWALNCYWRRDGEPIWLNPALIGDETRPNV 420 Query: 421 SDKIVTSHFLHRVAQRLRVDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQERER 480 SDKIVTSHFLHRVAQRLRVDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQERER Sbjct: 421 SDKIVTSHFLHRVAQRLRVDGKNVFPAYEDVFYYMWRERRLPGNVDPFDSRVDDKQERER 480 Query: 481 LMKVFTQGLQSAVGHVLPLARSHDGQGWQSGAWFLRSERCYLYPGDSPLGYRLPLDSLPW 540 LMKVFTQGLQSAVGHVLPLARSHDGQGWQSGAWFLRSERCYLYPGDSPLGYRLPLDSLPW Sbjct: 481 LMKVFTQGLQSAVGHVLPLARSHDGQGWQSGAWFLRSERCYLYPGDSPLGYRLPLDSLPW 540 Query: 541 VKESEYPAVYPADPTQAFRPLPGSAEIRRQMGSPQEPLAGLGKAASRVATAATTATASTV 600 VKE EYPAVYPADPTQAFRPLPGSAEIRRQMGSPQEPLAGLGKA SR A A++ ATAST+ Sbjct: 541 VKEGEYPAVYPADPTQAFRPLPGSAEIRRQMGSPQEPLAGLGKAVSRAAAASSAATASTI 600 Query: 601 SDMGRTNAASATQPVPAPFESANWLTRTALCAEVRNGVFYLFMPPLAQLEHYLELVAAIE 660 SDMGR NAAS TQPVPAPFESANWLTRTALCAEVRNGVFYLFMPPLAQLEHYLELVAAIE Sbjct: 601 SDMGRANAASPTQPVPAPFESANWLTRTALCAEVRNGVFYLFMPPLAQLEHYLELVAAIE 660 Query: 661 AVAEELKQPVLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTHLYDAAR 720 AVAEELKQPVLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTHLYDAAR Sbjct: 661 AVAEELKQPVLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTHLYDAAR 720 Query: 721 ASRLTTEKFMLDGHHSGTGGGNHMVLGGITTSDSPFLRRPDLLRSLISYWHNHPSLSYLF 780 ASRLTTEKFMLDGHHSGTGGGNHMVLGGITTSDSPFLRRPDLLRSLISYWHNHPSLSYLF Sbjct: 721 ASRLTTEKFMLDGHHSGTGGGNHMVLGGITTSDSPFLRRPDLLRSLISYWHNHPSLSYLF 780 Query: 781 SGMFIGPTSQAPRIDEARNDSTVEIELAFNEMDKQVARGDCPPWLVDRLLRHLLIDVTGN 840 SGMFIGPTSQAPRIDEARNDSTVEIELAFNEMDKQVARGDCPPWLVDRLLR+LLIDVTGN Sbjct: 781 SGMFIGPTSQAPRIDEARNDSTVEIELAFNEMDKQVARGDCPPWLVDRLLRNLLIDVTGN 840 Query: 841 THRAEFCIDKMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWKQPYKPA 900 THRAEFCIDKMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWKQPYKPA Sbjct: 841 THRAEFCIDKMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWKQPYKPA 900 Query: 901 RLVRWGTELHDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCSKIGDYAVKG 960 RLVRWGTELHDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRC KIGDYAVKG Sbjct: 901 RLVRWGTELHDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCPKIGDYAVKG 960 Query: 961 MQIELRTALEPWHVLGEESSGGGTARYVDSSLERLQVKVSGMASDRYVLTCNGVSVPLQP 1020 MQIELRTALEPWHVLGEESSGGGTARYVDSSLERLQVK+SGMASDRYVLTCNGVSVPLQP Sbjct: 961 MQIELRTALEPWHVLGEESSGGGTARYVDSSLERLQVKISGMASDRYVLTCNGVSVPLQP 1020 Query: 1021 TGTVGQFVAGVRYRAWQPPSALHPTIPVDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRNY 1080 TGTVGQFVAGVRYRAWQPPSALHPTIPVDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRNY Sbjct: 1021 TGTVGQFVAGVRYRAWQPPSALHPTIPVDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRNY 1080 Query: 1081 ETFPVNAFEAESRRLARYFRMNHTPGKLQVTPARASIEFPFTLDLRYF 1128 ETFPVNAFEAESRRLARYFRMNHTPGKLQVTPARASIEFPFTLDLRYF Sbjct: 1081 ETFPVNAFEAESRRLARYFRMNHTPGKLQVTPARASIEFPFTLDLRYF 1128 >gi|300309977|ref|YP_003774069.1| transglutaminase/cysteine protease [Herbaspirillum seropedicae SmR1] Length = 311 Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 121/291 (41%), Gaps = 37/291 (12%) Query: 7 LNHVTSYKYDRAINLGPQVIRLRPAPHSRTRILSYSLRVLPEPHFINWQQDPESNYLARL 66 ++H T+Y+Y + L QV+ L P LS+++ +LP+P + +D N + Sbjct: 9 IHHQTTYQYALPVRLSHQVLHLTPRELPWQACLSHTVNILPQPQLVRSYEDNFGNIIKAF 68 Query: 67 VFPEKTTEFKIEVDLVAEMSVINPFDFFLEPYAEQFPFDYAEDLQNELLPYRQKLPLSPL 126 T ++ D +S +P A Q +D A +Q R +P Sbjct: 69 SLDTDHTSLDVQADSWVALSARG------QPQA-QMAWDEAA-MQMAYHGGRVMMPGMLE 120 Query: 127 FAQFL-----QSIPREKV-------GSANFLVALNQKLANHIGYTIRMEPG---VQTP-E 170 + FL I RE + G ++ + L I +P V TP Sbjct: 121 ASNFLFESSHVRIKREFIRYAAECFGPGVSVLEGVRTLMLRIHEEFAFDPAATTVSTPVT 180 Query: 171 ETLELKSGSCRDSSWLLVQLLRHLGLAARFVSGYLIQLTADQKSLDGPSGPEADFTDL-H 229 E + G C+D + L++ LR +GLAAR+VSGYL+ + P P D H Sbjct: 181 EVFVNRRGVCQDFAHLMLSCLRSIGLAARYVSGYLL-------TEPPPGQPRLIGADASH 233 Query: 230 AWCEVYLPG-----AGWVGLDPTSGLFAGEGHIPLSCTPEPASAAPVSGLV 275 AW VY PG W+ DPT+G+F HI L + +P+ G++ Sbjct: 234 AWVSVYCPGVNGAEGSWIDADPTNGVFPDTSHITLGWGRDFLDISPLRGVL 284 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,914,030 Number of extensions: 179069 Number of successful extensions: 380 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 378 Number of HSP's successfully gapped: 2 Length of query: 1128 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1032 Effective length of database: 1,165,310 Effective search space: 1202599920 Effective search space used: 1202599920 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)