BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0151.p
         (333 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635...   687   0.0  
gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641...    60   2e-10

>gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  687 bits (1774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/333 (99%), Positives = 331/333 (99%)

Query: 1   MLSRTADHLFWMARYTERAENTARMLDVHVQTALLPQSTDDAEQGWRAVLGISELLYGYN 60
           MLSRTADHLFWMARYTERAENTARMLDVHVQTALLPQSTDDAEQGWRAVLGISELLYGYN
Sbjct: 1   MLSRTADHLFWMARYTERAENTARMLDVHVQTALLPQSTDDAEQGWRAVLGISELLYGYN 60

Query: 61  QKYDKLTQKDVIDFMVRDPNNPSSIASCLRQARENARAVRGALTTEAWEIQNATWIKMQS 120
           QKYDKLTQKDVIDFMVRDPNNPSSIASCLRQARENARAVRGALTTEAWEIQNATWIKMQS
Sbjct: 61  QKYDKLTQKDVIDFMVRDPNNPSSIASCLRQARENARAVRGALTTEAWEIQNATWIKMQS 120

Query: 121 YLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTMLEDEAFHFIRLGTFLERADNTARIIDV 180
           YLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTMLEDEAFHFIRLGTFLERADNTARIIDV
Sbjct: 121 YLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTMLEDEAFHFIRLGTFLERADNTARIIDV 180

Query: 181 KFHGAKETQSHKQGQSQSQSPSQSQGAAAETGQLDFYYWAAILRSVSGFEIYRKVYRDVI 240
           KFHGAKETQSHKQGQSQSQS SQSQGAA ETGQLDFYYWAAILRSVSGFEIYRKVYRDVI
Sbjct: 181 KFHGAKETQSHKQGQSQSQSQSQSQGAAEETGQLDFYYWAAILRSVSGFEIYRKVYRDVI 240

Query: 241 TPERVAELLILRADMPRSLLACMGNVISNLHHVRNDVSADTERFAGKLHADLKFARIEEI 300
           TPERVAELLILRADMPRSLLACMGNVISNLHHVRNDVSADTERFAGKLHADLKFARIEEI
Sbjct: 241 TPERVAELLILRADMPRSLLACMGNVISNLHHVRNDVSADTERFAGKLHADLKFARIEEI 300

Query: 301 LEAGLHDTLTEFLERIFELGNRISRDFLVPLAA 333
           LEAGLHDTLTEFLERIFELGNRISRDFLVPLAA
Sbjct: 301 LEAGLHDTLTEFLERIFELGNRISRDFLVPLAA 333


>gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641
           [Herbaspirillum seropedicae SmR1]
          Length = 833

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 84/185 (45%), Gaps = 17/185 (9%)

Query: 3   SRTADHLFWMARYTERAENTARMLDVHVQTALLPQSTDDAEQGWRAVLG-ISELLYGYNQ 61
           S + ++LFWM RY+ER +N AR+L    +T L  Q T D +   R +LG +S +      
Sbjct: 515 SHSGENLFWMGRYSERVKNLARLL----RTTL--QYTMDGQTESRGMLGSVSWICSQLGV 568

Query: 62  KYDKLTQKDVIDFM-------VRDPNNPSSIASCLRQARENARAVRGALTTEAWEIQNAT 114
           +  K   +  I  +       V DP+ P S+A+ LRQ    A  VR  L+ + W      
Sbjct: 569 QMPKSDPRPTITGLQQSLQAAVVDPSAPVSVATQLRQLANAAYQVREHLSLDNWHALTKM 628

Query: 115 WIKMQSYLQTNALEQNPSDFFEWVKHRSHLSRGVTIGTMLEDEAFHFIRLGTFLERADNT 174
              +Q  + T A  Q+       +   S L+ G  +  M  D  + F+ +G  +ER  N 
Sbjct: 629 PAMVQERINTPAAAQH--VLGNVIDACSGLA-GHALDDMTRDAGWQFLMVGRHIERMANM 685

Query: 175 ARIID 179
           A + D
Sbjct: 686 AALFD 690


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 947,092
Number of extensions: 34530
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 247
Effective length of database: 1,212,660
Effective search space: 299527020
Effective search space used: 299527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)