BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0145.p
         (535 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309964|ref|YP_003774056.1| tRNA nucleotidyltransferase/pol...   911   0.0  
gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase [He...    89   1e-18

>gi|300309964|ref|YP_003774056.1| tRNA
           nucleotidyltransferase/poly(A) polymerase
           [Herbaspirillum seropedicae SmR1]
          Length = 534

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/519 (99%), Positives = 517/519 (99%)

Query: 1   MIKKLIRSILGRGKTAAAAASAETPAPARKTRAKAGADGKIEPDVLGPKEHGIDPSLVSP 60
           MIKKLIRSILGRGKTAAAAASAE PAPARKTRAKAGADGKIEPDVLGPKEHGIDPSLVSP
Sbjct: 1   MIKKLIRSILGRGKTAAAAASAEPPAPARKTRAKAGADGKIEPDVLGPKEHGIDPSLVSP 60

Query: 61  NAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRF 120
           NAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRF
Sbjct: 61  NAVRVTQTLQEAGYKAFIVGGAVRDLLLGIKPKDFDVATNATPEQVKQLFRRAFIIGRRF 120

Query: 121 QIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDP 180
           QIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDP
Sbjct: 121 QIVHVMFGQELIEVTTFRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDP 180

Query: 181 ASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIR 240
           ASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIR
Sbjct: 181 ASQAVLDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKLKFTIDPASSAPIR 240

Query: 241 VMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV 300
           VMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV
Sbjct: 241 VMAPLIDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKFV 300

Query: 301 TLALADTDARVKQGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQ 360
           TLALADTDARVKQGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQ
Sbjct: 301 TLALADTDARVKQGKGVSPGFLFASLLWHQVLEKWRAYQAAGEYPIPALHLAADDVLDAQ 360

Query: 361 TEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSGELDAE 420
           TEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSGELDAE
Sbjct: 361 TEKLALQRKIASDMRDIWAMQPRFERRVGKAPYKLLEHLRLRAGFDFLLLRCQSGELDAE 420

Query: 421 LGEWWEAFIAGTGAEREELIARKPADAAGVAAGPKKRKRRGGRSRSRSGGDADFNDTAPA 480
           LGEWWEAFIAGTGAEREELIARKPADAAGVAAGPKKRKRRGGRSRSRSGGDADFNDTAPA
Sbjct: 421 LGEWWEAFIAGTGAEREELIARKPADAAGVAAGPKKRKRRGGRSRSRSGGDADFNDTAPA 480

Query: 481 GDVAPAPAEAPARAESAAPDSDSGAGPAPKRRRRRRSST 519
           GDVAPAPAEAPARAESAAPDSDSGA PAPKRRRRRRSST
Sbjct: 481 GDVAPAPAEAPARAESAAPDSDSGASPAPKRRRRRRSST 519


>gi|300313567|ref|YP_003777659.1| tRNA nucleotidyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 410

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 116/237 (48%), Gaps = 30/237 (12%)

Query: 75  KAFIVGGAVRDLLLGIKPKDFD-VATNATPEQVKQLFRRAFIIGRRFQI-VHVMFGQELI 132
           K + VGGAVRD LLG+  KD D V   ATPEQ+  L  R   +G+ F + +H    +E  
Sbjct: 2   KTYTVGGAVRDGLLGLPVKDRDHVVVGATPEQLLALGFRP--VGKDFPVFLHPHTQEEYA 59

Query: 133 EVTT-------FRGASAEAAPKDEHGRVLRDNTFGEQHEDATRRDFTINAMYYDPASQAV 185
              T       ++G +  AAP         D T     +D  RRD TINA+  D     V
Sbjct: 60  LARTERKTAPGYKGFAFHAAP---------DVTL---EDDLARRDLTINAIAQDEDGTLV 107

Query: 186 LDYHGGIADIRDKKLRIIGEPEARYREDPVRMLRVVRFAAKL-KFTIDPASSAPIRVMAP 244
             YHG  ADI  +  R + +    + EDPVR+LRV RFAA+   FT+ P ++A ++ M  
Sbjct: 108 DPYHGR-ADIAARVFRHVSDA---FIEDPVRILRVARFAARFADFTVAPETNALMQRMVE 163

Query: 245 L--IDNVPAARVFDEMLKLLMSGHALACLQQLRKEGLHHGLLPLLDVVLEQPLGEKF 299
              +D +   RV+ E+ + LM        + LR  G    +LP LD +   P  EK+
Sbjct: 164 QGEVDALVPERVWQELSRGLMEQKPSRMFEVLRACGALQRILPELDALWGVPQPEKW 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,435,122
Number of extensions: 60681
Number of successful extensions: 207
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 2
Length of query: 535
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 445
Effective length of database: 1,193,720
Effective search space: 531205400
Effective search space used: 531205400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)