BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0141.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309959|ref|YP_003774051.1| positive regulator of CheA prot...   374   e-105
gi|300312285|ref|YP_003776377.1| CheW chemotaxis protein [Herbas...    91   7e-20
gi|300311028|ref|YP_003775120.1| chemotaxis signal transduction ...    75   4e-15

>gi|300309959|ref|YP_003774051.1| positive regulator of CheA protein
           activity protein [Herbaspirillum seropedicae SmR1]
          Length = 194

 Score =  374 bits (960), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/194 (99%), Positives = 193/194 (99%)

Query: 1   MPSVSLNGESKRRRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAF 60
           MPSVSLNGESKRRRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAF
Sbjct: 1   MPSVSLNGESKRRRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAF 60

Query: 61  LRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLS 120
           LRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLS
Sbjct: 61  LRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLS 120

Query: 121 IGVDQIEPRPSFGAGIRADFVDGMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGG 180
           IGVDQIEPRPSFGAGIRADFVD MINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGG
Sbjct: 121 IGVDQIEPRPSFGAGIRADFVDAMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALGG 180

Query: 181 GPEAIGSISGAAQE 194
           GPEAIGSISGAAQE
Sbjct: 181 GPEAIGSISGAAQE 194


>gi|300312285|ref|YP_003776377.1| CheW chemotaxis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score = 90.9 bits (224), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 92/152 (60%), Gaps = 4/152 (2%)

Query: 23  RQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVVPVIDLSVRFG 82
            +FL F +G E + + I  ++EI  +  +T +   P F++GV+NLRG +VP++D+ ++F 
Sbjct: 21  NEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIKFQ 80

Query: 83  RAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRADFVD 142
                  + T +II+ +       ++G++VD+VS V+++  +QI+P P  G    +D++ 
Sbjct: 81  LGEPTYDQFTVVIILNIGGR----VVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDYLI 136

Query: 143 GMINVNERFLVVLDVPRVLSVDELASLLGMSA 174
           G+  + +R L+++D+ +++S  E+  +  ++A
Sbjct: 137 GLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168


>gi|300311028|ref|YP_003775120.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 74.7 bits (182), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 83/155 (53%), Gaps = 8/155 (5%)

Query: 21  ESRQFLTFLVGTESFAMPIASIREIIEFSG-LTEVPLMPAFLRGVINLRGSVVPVIDLSV 79
           +  Q + F +  E F +PI S++EI+     L  VP  PAF+ GVINLRGSV+PVIDL  
Sbjct: 367 DDEQMVIFRLDKEEFGVPIHSVQEIVRVPDELVHVPGAPAFVEGVINLRGSVLPVIDLRA 426

Query: 80  RFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSFGAGIRAD 139
           R G  P +       I++ +  D   +  G +VD V+ VL I  D IEP P F     A 
Sbjct: 427 RLG-LPAIERSDGQRIMVFVIAD---VRTGFIVDQVAEVLRIAKDAIEPAPRFSTQQSA- 481

Query: 140 FVDGMINVNE--RFLVVLDVPRVLSVDELASLLGM 172
            +  M N+ +  R + +L+  ++++ DE+  L  +
Sbjct: 482 LLARMANMEKQGRMVQLLEPAQLINADEMTGLASL 516



 Score = 71.2 bits (173), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 7/152 (4%)

Query: 13  RRAQEEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPAFLRGVINLRGSVV 72
           R + +E + +RQF+TF+ G E FA+ +A ++EII    +  VPL P  L G+ NLRG ++
Sbjct: 16  RPSSQERIATRQFVTFVAGDEVFAVEMAPVQEIIRSPDVVRVPLAPPTLDGLANLRGKIL 75

Query: 73  PVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVLSIGVDQIEPRPSF 132
           P++ L   FG         T  +++ + Q      LG +VD V++VL +  D+IE     
Sbjct: 76  PIVSLRRIFGFPERDKDDATRAVVINVGQP-----LGFVVDRVASVLDVEADKIEAPEGL 130

Query: 133 GAGIRADFVDGMI-NV-NERFLVVLDVPRVLS 162
            + I  + + G++ NV     ++VLD  +++S
Sbjct: 131 QSTIDTELLAGLLKNVGGYPVIMVLDFEKLVS 162


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 544,472
Number of extensions: 20422
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 4
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)