BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0140.p (587 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 1195 0.0 gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 384 e-107 gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 270 3e-73 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 236 5e-63 gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II ... 224 2e-59 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 1195 bits (3092), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/587 (99%), Positives = 587/587 (100%) Query: 1 MSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANELRRTAEDMT 60 MSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANELRRTAEDMT Sbjct: 9 MSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANELRRTAEDMT 68 Query: 61 KFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDPGAPGVPLG 120 KFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDPGAPGVPLG Sbjct: 69 KFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDPGAPGVPLG 128 Query: 121 ELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVIGAPNQAMAQ 180 ELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVIGAPNQAMAQ Sbjct: 129 ELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVIGAPNQAMAQ 188 Query: 181 ELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLLAASVVVLF 240 ELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLLAASVVVLF Sbjct: 189 ELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLLAASVVVLF 248 Query: 241 ACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTD 300 ACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTD Sbjct: 249 ACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTD 308 Query: 301 VIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNART 360 VIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNART Sbjct: 309 VIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNART 368 Query: 361 TDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEH 420 TDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEH Sbjct: 369 TDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEH 428 Query: 421 GKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRKTADLVQEI 480 GKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRKTADLVQEI Sbjct: 429 GKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRKTADLVQEI 488 Query: 481 AAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFQVGE 540 AAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFQVGE Sbjct: 489 AAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFQVGE 548 Query: 541 PRKSAPRASKAVPLPPSGGKSDSVRRLSMLDAPEDERGVDESSFKRF 587 PRK+APRASKAVPLPPSGGKSDSVRRLSMLDAPEDERGVDESSFKRF Sbjct: 549 PRKNAPRASKAVPLPPSGGKSDSVRRLSMLDAPEDERGVDESSFKRF 595 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 384 bits (985), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/553 (40%), Positives = 332/553 (60%), Gaps = 20/553 (3%) Query: 1 MSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANELRRTAEDMT 60 SI+Q+FI L V+++L+ ++V A+ + L A++SRY S LA ELR++++D+T Sbjct: 9 FSIRQIFIMLTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATELRQSSDDLT 68 Query: 61 KFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDPGA-PGVPL 119 + AR YV TGDP+ E +Y I+DIRNGK+ARP +Y R WD V A A P + V L Sbjct: 69 RLARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRPDSNQHVAL 128 Query: 120 GELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVIGAPNQAMA 179 +LM+ AGFT E+ K++EA D L K E+ A + VKG + D +G +T P+ A A Sbjct: 129 TDLMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKRADPDLAQA 188 Query: 180 QELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLLAASVVVL 239 +EL+ + Y K+M PV++F L+D RT V A + + L+A ++VVL Sbjct: 189 RELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSLIAIALVVL 248 Query: 240 FACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVV-PLPKGDKLSVLYSTQQMINKW 298 L L Y IR+ + A SV RRVA GDLT + P KG+ +L + M + Sbjct: 249 ACTLMLVYHAIRNPLA----HAASVARRVAHGDLTAQIDPAIKGETGELLEALTIMQSGL 304 Query: 299 TDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNA 358 ++ DV A + +++ +I+S + LS QQA+++EET++S+EE+T+T+ QNA NA Sbjct: 305 QTIVLDVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTSTVKQNAGNA 364 Query: 359 RTTDGIASLSASAATEGGEAVRETVAAM-------KQIASKIGIIDDIAYQTNLLALNAA 411 R +A+ ++ A GGE V V M K+I I +ID IA+QTN+LALNAA Sbjct: 365 RLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALNAA 424 Query: 412 IEAARAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVG-------LAEKAGGLLN 464 +EAARAGE G+GFAVVA EVR LA+RS +AA+EI + + SV L +AG + Sbjct: 425 VEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMR 484 Query: 465 QMVPSIRKTADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSA 524 ++V S+++ +++ I+ AS EQ++G+EQI A++QM Q TQ A+ E+ SA SE M Sbjct: 485 EVVESVQRVTEIITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESMQM 544 Query: 525 QAIHLQDLMRFFQ 537 QA L DL+ F+ Sbjct: 545 QAHKLTDLVGAFK 557 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 270 bits (689), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 149/312 (47%), Positives = 214/312 (68%) Query: 236 VVVLFACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMI 295 +++L WL R + Q+GGEP D ++V++R+++GDL + L G + S++++ Q+M+ Sbjct: 204 LLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQTITLKPGCRDSMMHAIQKMM 263 Query: 296 NKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNA 355 + V+G+V G A L S +E++S+++Q+LS + +QA VE+TS ++ +I A + A Sbjct: 264 TRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTEQANGVEQTSEALAQIHALLQSTA 323 Query: 356 DNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAA 415 NAR TD IA+ +A A + E V++ VAA++QIA KI +IDDIAYQTNLLALNA IEAA Sbjct: 324 QNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGKIAVIDDIAYQTNLLALNATIEAA 383 Query: 416 RAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVGLAEKAGGLLNQMVPSIRKTAD 475 AGEHG GFAVVAAEVR+LAERSQSAAQEI VA +V LA A L+ MVP+I +T+ Sbjct: 384 HAGEHGSGFAVVAAEVRRLAERSQSAAQEIDEVARANVTLACAAERQLSDMVPTITRTSV 443 Query: 476 LVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRF 535 LVQ+I +S +QST + QI+ A Q+AQ Q + +SEEL+ TSEE++ +A+ LQ + F Sbjct: 444 LVQDIVQSSEQQSTAVSQISTAASQLAQVIQQNSLSSEELAVTSEELNRRALLLQTAVGF 503 Query: 536 FQVGEPRKSAPR 547 FQ R R Sbjct: 504 FQCQLARGMQAR 515 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 236 bits (601), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 145/390 (37%), Positives = 232/390 (59%), Gaps = 14/390 (3%) Query: 183 VFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLLAASVVVLFAC 242 + Q R + K + +++ R DE A Y + + L+A SV++ A Sbjct: 148 LLTQKIRPVQAKWLDNLDELGRFEDELNNQASAAADTTYRSILTTTWTLVAGSVLLAVAA 207 Query: 243 LWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTDVI 302 +L R + Q+GGEP A + ++A+G+L V +PL KGD+ S++ S + M + T ++ Sbjct: 208 AFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIV 267 Query: 303 GDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNARTTD 362 + +A S+++A+ QI+ + LS +QAA++EET++S+EEIT+T+ QN NA Sbjct: 268 DGIKHSAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGH 327 Query: 363 GIASLSASAATEGGEAVRETVAAMKQIASK-------IGIIDDIAYQTNLLALNAAIEAA 415 +A ++ A +GGE V V MK I+ I ++ IA+QTN+LALNAA+EAA Sbjct: 328 QLARSASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAA 387 Query: 416 RAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSV-------GLAEKAGGLLNQMVP 468 RAGE G+GFAVVA EVR LA+RS S+A+EI + E+SV L ++AG ++++V Sbjct: 388 RAGEQGRGFAVVATEVRSLAQRSASSAKEIRGLIESSVQHVEAGQKLVDEAGLTMDEVVR 447 Query: 469 SIRKTADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIH 528 SI++ DL+ EI AAS+EQS+G+ QIN A+ QM + TQ A+ EE ++ ++ M+ QA Sbjct: 448 SIQQVNDLMSEITAASNEQSSGISQINIAISQMDEVTQQNAALVEESASAAQSMAQQANS 507 Query: 529 LQDLMRFFQVGEPRKSAPRASKAVPLPPSG 558 L+D + F++ +P+ + + V P G Sbjct: 508 LRDAVAVFRIEQPQPAVAYPREQVIHPAMG 537 >gi|300311931|ref|YP_003776023.1| methyl-accepting chemotaxis II protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 224 bits (571), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 201/298 (67%), Gaps = 1/298 (0%) Query: 250 IRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQQMINKWTDVIGDVSGTA 309 +R ++GGEP A ++R++A+G+L V V L D+ S+LY+ M + T+++ +V+ + Sbjct: 238 VRRELGGEPAYAADIVRQIADGNLCVEVNLRSNDRSSLLYAMHTMRARLTEIMRNVTLST 297 Query: 310 TSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNARTTDGIASLSA 369 +L +S Q+++++ AL+ +++QAA VEE ++ + I Q ++AR T+ IA +A Sbjct: 298 QALGVSSRQLNATAHALAQASSEQAAAVEEVHGAIASMNQAIQQTGEHARRTNQIAVAAA 357 Query: 370 SAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAA 429 S A + G AV+ TV AM+ IA ++G+IDDIAYQTNLLALNAAIEAARAGEHG+GF+VVAA Sbjct: 358 SDADKSGAAVQTTVDAMRGIARQVGVIDDIAYQTNLLALNAAIEAARAGEHGRGFSVVAA 417 Query: 430 EVRKLAERSQSAAQEIIAVAETSVGLAEKAGG-LLNQMVPSIRKTADLVQEIAAASHEQS 488 EVRKLAERSQS+A EI +A+ SV LAE+ L+ + IR+ + + +I +S Q Sbjct: 418 EVRKLAERSQSSAHEISVIAQQSVELAEQTSQRLVEGTLQGIRQASQQINQITLSSRMQE 477 Query: 489 TGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFFQVGEPRKSAP 546 G+ +I AV Q+ TTQ A+ASEEL+ T+E M+ +A L + +F++ + ++ P Sbjct: 478 EGVAEIGVAVTQLNDTTQRNAAASEELAITAEAMAERARELNAQLAYFRLEQSQQGQP 535 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.127 0.344 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,516,954 Number of extensions: 57620 Number of successful extensions: 570 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 266 Number of HSP's successfully gapped: 70 Length of query: 587 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 497 Effective length of database: 1,193,720 Effective search space: 593278840 Effective search space used: 593278840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)