BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0137.p (122 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309955|ref|YP_003774047.1| two-component system sensor his... 251 1e-68 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 123 4e-30 gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p... 100 4e-23 gi|300311785|ref|YP_003775877.1| chemotaxis response regulator C... 94 2e-21 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 86 7e-19 >gi|300309955|ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 251 bits (641), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD Sbjct: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI Sbjct: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 Query: 121 LP 122 LP Sbjct: 121 LP 122 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 123 bits (309), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 58/120 (48%), Positives = 81/120 (67%) Query: 1 MEKNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLD 60 M K IL VDDS SLRQ + +LK+AGY+V EA DG AL + F+LV++D NMP +D Sbjct: 1 MSKTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMD 60 Query: 61 GLSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 GL+ +R ++++ +Y P++MLTTE S+ K +GKAAG W+ KPF P L + V K+I Sbjct: 61 GLTLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 >gi|300311034|ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 100 bits (248), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 46/119 (38%), Positives = 78/119 (65%), Gaps = 1/119 (0%) Query: 3 KNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLD-GRKFNLVISDLNMPHLDG 61 K+I +VDDS ++ ++ + L+ AG+ V+ A DG +AL + G K +L+I+D+NMP++DG Sbjct: 5 KSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMDG 64 Query: 62 LSFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 L +R ++ +P ++F P++ LTTES ++ EGK AG W+ KP LL V +++ Sbjct: 65 LELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 >gi|300311785|ref|YP_003775877.1| chemotaxis response regulator CheY [Herbaspirillum seropedicae SmR1] Length = 122 Score = 94.4 bits (233), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/117 (41%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 5 ILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGR-KFNLVISDLNMPHLDGLS 63 IL+VDDS ++R + LK G V A DG+ L+ L G LV+SD+NMP++DGL+ Sbjct: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLT 63 Query: 64 FVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 +++ +IMLTTE+S K+ GKAAGI+ W+ KPF+ +L KL+ Sbjct: 64 MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 86.3 bits (212), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 44/117 (37%), Positives = 70/117 (59%), Gaps = 1/117 (0%) Query: 5 ILIVDDSFSLRQTISAALKSAGY-HVEEAADGKQALAHLDGRKFNLVISDLNMPHLDGLS 63 L+VDD ++R+ + LK GY +V+EA DG QAL L +F+ V+SD NMP++DGL+ Sbjct: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLT 67 Query: 64 FVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLI 120 ++E+++ PA PV+M+T E+ + AG +V KPF L + + K+ Sbjct: 68 MLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIF 124 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 355,930 Number of extensions: 12676 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 31 Length of query: 122 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 48 Effective length of database: 1,269,480 Effective search space: 60935040 Effective search space used: 60935040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)