BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0132.p (646 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309950|ref|YP_003774042.1| molecular chaperone protein [He... 1093 0.0 gi|300312439|ref|YP_003776531.1| molecular chaperone protein [He... 423 e-119 gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 fami... 420 e-118 >gi|300309950|ref|YP_003774042.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 1093 bits (2827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/540 (100%), Positives = 540/540 (100%) Query: 1 MGKIIGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60 MGKIIGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60 Query: 61 NPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAEVL 120 NPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAEVL Sbjct: 61 NPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAEVL 120 Query: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 Query: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY Sbjct: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240 Query: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300 Query: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK Sbjct: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360 Query: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420 DPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP Sbjct: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420 Query: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRGTPQIEVTFDID 480 TKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRGTPQIEVTFDID Sbjct: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRGTPQIEVTFDID 480 Query: 481 ANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAETRNQG 540 ANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAETRNQG Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAETRNQG 540 >gi|300312439|ref|YP_003776531.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] Length = 621 Score = 423 bits (1088), Expect = e-119, Method: Compositional matrix adjust. Identities = 239/551 (43%), Positives = 353/551 (64%), Gaps = 31/551 (5%) Query: 5 IGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVTNPKN 64 +GIDLGTTNS VA + + P+V+ + +G PS++ Y +G +G A+ T+P+N Sbjct: 22 VGIDLGTTNSLVATVRNSIPEVLADDDGRVLLPSVVRYLPNGHANIGYKAQAAQTTDPRN 81 Query: 65 TIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLA----PPQISAEVL 120 TI + KR +GR K++ N MPY D D V+ K +A P ++SA++L Sbjct: 82 TIVSVKRFMGRGL--KDIAHAEN-MPY-----DFQDQPGMVQIKTVAGVKSPVEVSAQIL 133 Query: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180 +++TAED LG+++ AVITVPAYF+DAQRQATKDA ++AGL+V R++NEPTAAA+A+G Sbjct: 134 ATLRQTAEDALGDDLVGAVITVPAYFDDAQRQATKDAAQLAGLNVLRLLNEPTAAAIAYG 193 Query: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240 LD + +G AVYDLGGGTFD+SI+++ FEVL+T GD+ LGG+DFD RL + Sbjct: 194 LDNSSEG--VFAVYDLGGGTFDISILKLT----RGVFEVLATGGDSALGGDDFDHRLFCW 247 Query: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300 I E + LS + L +KA K LS+ + +I+ + +G VHL+ Sbjct: 248 ISHEAQL---QPLSDEDTRLLMVKA--REVKELLSTKDEVQIDA---VLRSGEEVHLS-- 297 Query: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360 IT A+ + + L+AKT+ P R A++DAG+ V D+D V+LVGG TRMP + V EFF Sbjct: 298 ITAAQFNEITQHLVAKTMAPVRKALRDAGLTVEDVDGVVLVGGATRMPHIRRAVGEFFKT 357 Query: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRK---DVLLLDVTPLSLGIETMGGVMTKMIKKNT 417 +P +++PD+ VA+GAA+Q ++L+G+R D LLLDV PLSLGIETMGG+ K+I +N+ Sbjct: 358 NPLSNIDPDKVVALGAAVQANLLAGNRAPGDDWLLLDVIPLSLGIETMGGLAEKVIPRNS 417 Query: 418 TIPTKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRGTPQIEVTF 477 TIP +Q F+T D Q A+ I V QGERE+ ++L F L GIPP G +I VT+ Sbjct: 418 TIPCARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTY 477 Query: 478 DIDANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAETR 537 +DA+G+L V A++ +G E IT+K + GL ++EI +M++++ ++A+ED + + L E + Sbjct: 478 QVDADGLLAVSAREMTSGVEASITVKPSYGLGDDEIARMLQESFSSADEDMQRRALREEQ 537 Query: 538 NQGARWYTRPR 548 + R R Sbjct: 538 VEAERIVLATR 548 >gi|300312141|ref|YP_003776233.1| molecular chaperone, Hsp70 family [Herbaspirillum seropedicae SmR1] Length = 642 Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust. Identities = 234/548 (42%), Positives = 354/548 (64%), Gaps = 36/548 (6%) Query: 5 IGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEI--------LVGAPAKR 56 +GIDLGTTNS VA ++ Q +++ + G PS++ Y + +VG AK Sbjct: 22 VGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYLPAHSLQPADRPPAVVGHAAKA 81 Query: 57 QAVTNPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIV---AADNGDAWIGVRDKKLAPP 113 +P+NT+ + KRL+GR + + MPY + D G++ P Sbjct: 82 AQSDDPRNTLSSIKRLMGRDRADISAGNSAD-MPYAFIDKPGLVQIDTAAGIK----TPI 136 Query: 114 QISAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPT 173 +SA++LR +++ AE LG E++ AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPT Sbjct: 137 DVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPT 196 Query: 174 AAALAFGLDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 233 AAA+A+GLD+A +G A+YDLGGGTFD+SI++++ FEVL+TNGD LGG+DF Sbjct: 197 AAAIAYGLDQAAEG--VFAIYDLGGGTFDISILKLS----RGVFEVLATNGDGALGGDDF 250 Query: 234 DQRLIDYIIDEFKKINGLDLSKDAIALQRIKASAERAKIELS--SSQQTEINEPYIAMAN 291 D+ + D+I+D+ + ++D +R+ +A +AK LS +S E+N +++ Sbjct: 251 DRCIHDWIVDQSPLASAELTTQDT---RRLLTAARQAKETLSRETSATIELN-----LSS 302 Query: 292 GAPVHLNLKITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVI 351 G V L L TR S+ + L+A+T+ P R A++DAG+ VS+ID V+LVGG TRMP+V Sbjct: 303 GQAVQLAL--TREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVR 360 Query: 352 EKVKEFFGKDPRRDVNPDEAVAVGAAIQGSVLSGDRK--DVLLLDVTPLSLGIETMGGVM 409 V +FFG+ P D++PD+ VA+GAA+Q +VL+G+R+ D LLLDV PLSLG+ETMGG++ Sbjct: 361 AAVADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSDWLLLDVCPLSLGLETMGGLV 420 Query: 410 TKMIKKNTTIPTKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRG 469 K+I +N+TIP +Q F+T D Q A+++ V QGERE+ ++L L GIPP G Sbjct: 421 EKIIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVAG 480 Query: 470 TPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKR 529 +I VTF IDA+G+L V A++++TG E +T+K + GL++ I +M+ +A +A +D + Sbjct: 481 AARIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAVGHATDDMK 540 Query: 530 LKELAETR 537 ++ L E + Sbjct: 541 MRMLREAQ 548 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,775,869 Number of extensions: 74620 Number of successful extensions: 231 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 223 Number of HSP's successfully gapped: 3 Length of query: 646 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 555 Effective length of database: 1,188,985 Effective search space: 659886675 Effective search space used: 659886675 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)