BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0129.p
         (924 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum ...   778   0.0  
gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspiril...   760   0.0  

>gi|300309948|ref|YP_003774040.1| ferrochelatase [Herbaspirillum
           seropedicae SmR1]
          Length = 369

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/369 (100%), Positives = 369/369 (100%)

Query: 556 MAFRTEPKHTHGSSASTAIVLVNLGTPDAPNAPALRRYLGQFLSDPRVVEIPRAVWWFIL 615
           MAFRTEPKHTHGSSASTAIVLVNLGTPDAPNAPALRRYLGQFLSDPRVVEIPRAVWWFIL
Sbjct: 1   MAFRTEPKHTHGSSASTAIVLVNLGTPDAPNAPALRRYLGQFLSDPRVVEIPRAVWWFIL 60

Query: 616 NGVILPFRSSKSAEKYASIWTEQGSPLRVHTERQAAALGAQLAARGHHQLQVVHAMRYGS 675
           NGVILPFRSSKSAEKYASIWTEQGSPLRVHTERQAAALGAQLAARGHHQLQVVHAMRYGS
Sbjct: 61  NGVILPFRSSKSAEKYASIWTEQGSPLRVHTERQAAALGAQLAARGHHQLQVVHAMRYGS 120

Query: 676 PSLPQVLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYRKVRNIPELRLIRNYHD 735
           PSLPQVLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYRKVRNIPELRLIRNYHD
Sbjct: 121 PSLPQVLDQLKQQGCTRILVLPAYPQYSGTTTASIFDAVFDHYRKVRNIPELRLIRNYHD 180

Query: 736 QDGYIQALRQSVLDHWEVNGRPDKLVMSFHGVPKRTLELGDPYHCECYKTARLLAQSLGL 795
           QDGYIQALRQSVLDHWEVNGRPDKLVMSFHGVPKRTLELGDPYHCECYKTARLLAQSLGL
Sbjct: 181 QDGYIQALRQSVLDHWEVNGRPDKLVMSFHGVPKRTLELGDPYHCECYKTARLLAQSLGL 240

Query: 796 NDEQYLVTFQSRFGKAEWLQPYTAPTVQALGRQGVRRIDVMCPGFTSDCLETLEEIAMEV 855
           NDEQYLVTFQSRFGKAEWLQPYTAPTVQALGRQGVRRIDVMCPGFTSDCLETLEEIAMEV
Sbjct: 241 NDEQYLVTFQSRFGKAEWLQPYTAPTVQALGRQGVRRIDVMCPGFTSDCLETLEEIAMEV 300

Query: 856 KDEFLHAGGKEFHFIPCLNESPAWIAGMVEIVEQHLAGWPTMSNAAAREQMAQDAAISAE 915
           KDEFLHAGGKEFHFIPCLNESPAWIAGMVEIVEQHLAGWPTMSNAAAREQMAQDAAISAE
Sbjct: 301 KDEFLHAGGKEFHFIPCLNESPAWIAGMVEIVEQHLAGWPTMSNAAAREQMAQDAAISAE 360

Query: 916 RAKALGAPQ 924
           RAKALGAPQ
Sbjct: 361 RAKALGAPQ 369


>gi|300309947|ref|YP_003774039.1| DNA repair protein [Herbaspirillum
           seropedicae SmR1]
          Length = 548

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/413 (97%), Positives = 403/413 (97%), Gaps = 4/413 (0%)

Query: 1   VIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRGDPSVVREGAAKADVSADFSA 60
           VIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRGDPSVVREGAAKADVSADFSA
Sbjct: 11  VIVDAIELEFARGFSVFTGETGAGKSILIDALALALGGRGDPSVVREGAAKADVSADFSA 70

Query: 61  TPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQLREVGEMLVDIHGQH 120
           TPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQLREVGEMLVDIHGQH
Sbjct: 71  TPEVQAWLEEHEFADEHGGVLLRRVIDNAGRSKAYINGSAATAAQLREVGEMLVDIHGQH 130

Query: 121 AHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQNRENFHEQDARNVLLERER 180
           AHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQ RE F EQDARNVLLERER
Sbjct: 131 AHQSLMKADAQRQLLDSQAGLLEQAREVAASYKTWRALARQ-REQF-EQDARNVLLERER 188

Query: 181 LEWQVAELHKLAVKPGEWAEISTEHSRLSHAAALIGGAQEALGVISESESPILSQLSSIT 240
           LEWQVAELHKLAVKPGEWAEISTEHSRLSHAAALI GAQEALGVISESESPILSQLSSIT
Sbjct: 189 LEWQVAELHKLAVKPGEWAEISTEHSRLSHAAALISGAQEALGVISESESPILSQLSSIT 248

Query: 241 QKLTKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVEERLEAIHS 300
           QKLTKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVEERLEAIHS
Sbjct: 249 QKLTKLVDVDTALKPVLDALEPAQIQLQEAVYALNDYLGRVELDPARLQEVEERLEAIHS 308

Query: 301 TARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRAQEDKLRQAYLALAQKLSKARAKA 360
           TARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRAQEDKLRQAYLALAQKLSKARAKA
Sbjct: 309 TARKFHVQPDELPEEYRKLSEQLKQLADASDLDALRAQEDKLRQAYLALAQKLSKARAKA 368

Query: 361 AAALGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVAPGGGGGRGP 413
           AAALGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVA  G  G  P
Sbjct: 369 AAALGEAVTAAMQDLSMAGGRFEIALNEVEPAAYGLEQVEFLVA--GHAGVAP 419


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,508,928
Number of extensions: 95635
Number of successful extensions: 449
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 446
Number of HSP's successfully gapped: 2
Length of query: 924
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 830
Effective length of database: 1,174,780
Effective search space: 975067400
Effective search space used: 975067400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)