BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0127.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309945|ref|YP_003774037.1| phosphatase (HAD superfamily) [...   481   e-137

>gi|300309945|ref|YP_003774037.1| phosphatase (HAD superfamily)
           [Herbaspirillum seropedicae SmR1]
          Length = 244

 Score =  481 bits (1239), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 240/244 (98%), Positives = 241/244 (98%)

Query: 1   MKPSASTLPASSAASPIQAVLFDLDDTLWAIEPVLVRAETLLYDWLRQHAPAVAAAHTIA 60
           MKPSASTLPAS AASPIQAVLFDLDDTLWAIEPVLVRAETLLYDWLRQHAPAVAAAHTIA
Sbjct: 1   MKPSASTLPASPAASPIQAVLFDLDDTLWAIEPVLVRAETLLYDWLRQHAPAVAAAHTIA 60

Query: 61  SLRERRLALMQTDPAYRINLWKLRHTALSEVFREHDVDLALVDPAMALFSEARSTVALFD 120
           SLRERR+ALMQTDPAYRINLWKLRHTALSEVFREHDVDLALVDPAMALFSEARSTVALFD
Sbjct: 61  SLRERRMALMQTDPAYRINLWKLRHTALSEVFREHDVDLALVDPAMALFSEARSTVALFD 120

Query: 121 DVEPALLRLKGKLTLGSVSNGFADLERIGLAGHFGVSIAAHRFGRAKPDPAIFHAACEAL 180
           DVEPALLRLKGKLTLGSVSNGFADLERIGLAGHFGVSIAAHRFGRAKPDPAIFHAACEAL
Sbjct: 121 DVEPALLRLKGKLTLGSVSNGFADLERIGLAGHFGVSIAAHRFGRAKPDPAIFHAACEAL 180

Query: 181 QVAPGATVYVGDDPLLDVQGAQQAGLKAVWMNRFGRVLPEGIRPDAVCRDLHELHDWLEA 240
           QVAPGATVYVGDDPLLDVQGAQQAGLKAVWMNRFGRVLPE IRPDAVCRDLHELHDWLEA
Sbjct: 181 QVAPGATVYVGDDPLLDVQGAQQAGLKAVWMNRFGRVLPEDIRPDAVCRDLHELHDWLEA 240

Query: 241 QCAA 244
           Q AA
Sbjct: 241 QSAA 244


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 767,338
Number of extensions: 31333
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)