BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0118.p (611 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 727 0.0 gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC trans... 238 9e-64 gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC tra... 233 4e-62 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 233 5e-62 gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 230 2e-61 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/361 (100%), Positives = 361/361 (100%) Query: 251 MKSHQEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLE 310 MKSHQEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLE Sbjct: 1 MKSHQEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLE 60 Query: 311 FPDEGGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAE 370 FPDEGGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAE Sbjct: 61 FPDEGGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAE 120 Query: 371 RVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAV 430 RVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAV Sbjct: 121 RVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAV 180 Query: 431 RSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAE 490 RSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAE Sbjct: 181 RSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAE 240 Query: 491 FIGAMNRVDGIVAGDRLQLPTGTLPLPPDAVAGQPAQALFRPEDVEVIDITEADAHCLRG 550 FIGAMNRVDGIVAGDRLQLPTGTLPLPPDAVAGQPAQALFRPEDVEVIDITEADAHCLRG Sbjct: 241 FIGAMNRVDGIVAGDRLQLPTGTLPLPPDAVAGQPAQALFRPEDVEVIDITEADAHCLRG 300 Query: 551 KLINTFFLGDRTRFEIEIGAERPVIAETSRRGWWEAGQQIAIRVPATALVTMAPRAAKET 610 KLINTFFLGDRTRFEIEIGAERPVIAETSRRGWWEAGQQIAIRVPATALVTMAPRAAKET Sbjct: 301 KLINTFFLGDRTRFEIEIGAERPVIAETSRRGWWEAGQQIAIRVPATALVTMAPRAAKET 360 Query: 611 A 611 A Sbjct: 361 A 361 >gi|300310414|ref|YP_003774506.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 376 Score = 238 bits (608), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 135/345 (39%), Positives = 194/345 (56%), Gaps = 17/345 (4%) Query: 245 AQESQSMKSHQEAVSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLR 304 AQES Q V ++ K++ ++ LDL I GE L LLGPSG GKTT L Sbjct: 11 AQES----VQQSDVLVQFCGVKKTYDGENLIVKNLDLDIRRGEFLTLLGPSGSGKTTCLM 66 Query: 305 MIAGLEFPDEGGRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIA 364 M+AG EFP GG + + + +P KR +GMVFQNYALFP+M++ +N+AY + +RK+ Sbjct: 67 MLAGFEFP-TGGEIRLDGQLLNRVPPHKRNIGMVFQNYALFPHMTIAQNVAYPLSVRKMD 125 Query: 365 AGERAERVERLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDA 424 R +V++ L+MV + R QLSGGQ+QRVALAR L +P+++L+DEPL ALD Sbjct: 126 RATREAKVKQALDMVQMGKFGDRYPTQLSGGQQQRVALARTLVFDPQLVLMDEPLGALDK 185 Query: 425 KLREAVRSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPA 484 +LRE ++ +L L + LG+T +YVTHDQ EA+ + DR+ V ++G I Q+ E+Y +P Sbjct: 186 QLREHMQLELKALHKRLGVTFVYVTHDQSEALTMSDRVAVFDQGVIQQLAPVTELYEYPD 245 Query: 485 NDFVAEFIGAMNRVDGIVAGDRLQLPTGTLPLPPDAV----------AGQPAQALFRPED 534 N FVA FIG NR G V + +Q T+ L A AGQ A RPE Sbjct: 246 NQFVANFIGDNNRFKGSV--ESVQGEHCTVRLTDGAALTGLNVHRAHAGQSITACVRPER 303 Query: 535 VEVIDITEADAHCLRGKLINTFFLGDRTRFEIEIGAERPVIAETS 579 + + A+ + +R + + GD R + + + S Sbjct: 304 IRLAAGGSAEPNSIRASIAGLIYFGDHVRVRCTVAGQEDCFVKLS 348 >gi|300313086|ref|YP_003777178.1| sn-glycerol-3-phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 364 Score = 233 bits (593), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 132/288 (45%), Positives = 182/288 (63%), Gaps = 14/288 (4%) Query: 259 SIRLSQCAKSFANGTRA---LQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEG 315 +I L Q K++ GT+A + +D +I GE +V++GPSGCGK+T LRM+AGLE Sbjct: 3 AIHLKQVRKTYGAGTKAVDVIHGIDAEIADGEFIVMVGPSGCGKSTLLRMVAGLE-EISS 61 Query: 316 GRVLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERL 375 G+++ G+ V L ++R + MVFQNYAL+P+M+V +N+AYG+KI+ ++ E RV+R Sbjct: 62 GQIVIGDRVVNDLEPKERDIAMVFQNYALYPHMTVYQNMAYGLKIQGLSKSEIDARVQRA 121 Query: 376 LEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLN 435 ++ L L R QLSGGQ+QRVA+ RA+ +P V L DEPL+ LDAKLR +R ++ Sbjct: 122 AAILELGALLERTPRQLSGGQRQRVAMGRAIVRKPAVFLFDEPLSNLDAKLRVQMRLEIQ 181 Query: 436 KLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGA- 494 KL SL T++YVTHDQ EAM LG R++VM RG QIGTP E+Y PA FVA FIG+ Sbjct: 182 KLHASLRTTSLYVTHDQVEAMTLGQRMIVMNRGVAEQIGTPAEVYARPATTFVASFIGSP 241 Query: 495 -MNRVDGIVAGD--RLQLPTGT------LPLPPDAVAGQPAQALFRPE 533 MN + G ++ D ++ G LP P AGQ RPE Sbjct: 242 PMNLLQGKLSADGASFEVSKGNASDILRLPQPLTGAAGQERILGVRPE 289 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 233 bits (593), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/247 (50%), Positives = 171/247 (69%), Gaps = 6/247 (2%) Query: 258 VSIRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGR 317 +SI + K F + T AL + L GE LLGPSGCGKTT LR+IAGLE PD G+ Sbjct: 1 MSIEVHHIQKRFGSFT-ALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPD-SGQ 58 Query: 318 VLFGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIR----KIAAGERAERVE 373 VL ED + + +R VG VFQ+YALF +M+V ENIA+G++++ + + E+V+ Sbjct: 59 VLLDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVK 118 Query: 374 RLLEMVHLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSD 433 RLLE+V L L+ R QLSGGQ+QR+ALARALA+EPRVLLLDEP ALDAK+R+ +R Sbjct: 119 RLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRW 178 Query: 434 LNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIG 493 L +L L +T+I+VTHDQ EA+ + D++V+M +G++ QIGTP+ +Y HPA+ FV F+G Sbjct: 179 LRRLHDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLG 238 Query: 494 AMNRVDG 500 +N G Sbjct: 239 NVNLFHG 245 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 230 bits (587), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 134/301 (44%), Positives = 187/301 (62%), Gaps = 18/301 (5%) Query: 276 LQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGG------RVLFGEEDVTMLP 329 L+ + +++ GE + LLGPSG GKTT LR +AGLE P G RV G + M P Sbjct: 23 LKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPKAGAIDIGKRRVFDGARNFEM-P 81 Query: 330 IEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLEMVHLQGLSHRRV 389 E+R +G+VFQ+YAL+P+ +V +N+AYG+K+RK +GE A RV+ +L + L L R Sbjct: 82 AEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEIATRVKAVLSQLGLGHLGERYP 141 Query: 390 DQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLRSLGITAIYVT 449 QLSGGQ+QRVA+ARAL P+V+LLDEPL+ LDAKLRE R+ L +L+ LG++A+ VT Sbjct: 142 HQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLREEARAFLRELIVRLGLSALMVT 201 Query: 450 HDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRVDGIV---AGDR 506 HDQGEAMA+ DRI+++ G+I Q GTPQ +Y P F AEF+G+ N++ V G+R Sbjct: 202 HDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFTAEFMGSNNKLAAEVLSREGER 261 Query: 507 LQLP------TGTLPLPPDAVAGQPAQALFRPEDVEVIDITEADAHCLRGKLINTFFLGD 560 + + TL D G+ + R E V + EA + +R L +LGD Sbjct: 262 VTVKLDGGTAVATLRGRSDVRPGEQLTGIIRVEQVRISG--EASDNAIRLPLSTCMYLGD 319 Query: 561 R 561 R Sbjct: 320 R 320 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.139 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,671,384 Number of extensions: 66251 Number of successful extensions: 679 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 403 Number of HSP's successfully gapped: 150 Length of query: 611 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 520 Effective length of database: 1,188,985 Effective search space: 618272200 Effective search space used: 618272200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)