BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0117.p (298 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 559 e-161 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 74 1e-14 gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permeas... 72 8e-14 gi|300312150|ref|YP_003776242.1| molybdate ABC transporter perme... 69 4e-13 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 68 1e-12 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 559 bits (1441), Expect = e-161, Method: Compositional matrix adjust. Identities = 289/291 (99%), Positives = 290/291 (99%) Query: 8 MKTVLPTSARPARPPASRPRRAGNQVWLCFAVPGLTLFCAFWLLPMARLVGVGASGPDGA 67 MKTVLPTSARPARPPASRPRRAGNQVWLCFAVPGLTLFCAFWLLPMARLVGVGASGPDGA Sbjct: 1 MKTVLPTSARPARPPASRPRRAGNQVWLCFAVPGLTLFCAFWLLPMARLVGVGASGPDGA 60 Query: 68 MAYLSVLTNRHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPL 127 MAYLSVLTNRHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPL Sbjct: 61 MAYLSVLTNRHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPL 120 Query: 128 AFPGVVVGFMVIMLAGRQGLIGALTNWLFGESLVFAYSLSGLFLGYLYFSIPRVILTVVA 187 AFPGVVVGFMVIMLAGRQGLIGALTN LFGESLVFAYSL+GLFLGYLYFSIPRVILTVVA Sbjct: 121 AFPGVVVGFMVIMLAGRQGLIGALTNGLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVA 180 Query: 188 AAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAAN 247 AAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAAN Sbjct: 181 AAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAAN 240 Query: 248 IDVLPMTIYNEFTGYANFATAASLSIVLGVITWAVLALARSLTGSGVAAAA 298 IDVLPMTIYNEFTGYANFATAASLSIVLGVITWAVLALARSLTGSGVAAAA Sbjct: 241 IDVLPMTIYNEFTGYANFATAASLSIVLGVITWAVLALARSLTGSGVAAAA 291 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 106/225 (47%), Gaps = 11/225 (4%) Query: 65 DGAMAYLSVLTNRHYFASLVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLT 124 G Y++ +T ++++ TL +A L V + + F G+ LLL ++ Sbjct: 61 KGWDVYVASITEADAWSAIKLTLITAAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTLID 120 Query: 125 FPLAFPGVVVGFMVIMLAGRQGLIGALTNWLFGESLVFAYSLSGLFLGYLYFSIPRVILT 184 P + V+ G + ++L G QG +G WL + +++ G+ L ++ + P V Sbjct: 121 LPFSVSPVISGLIYVLLFGLQGYLGP---WLREHDIKILFAVPGIVLATIFVTFPFVARE 177 Query: 185 VVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTL 244 ++ + EEAA LGA W+ HV LP + L+ +C A ++G FG + Sbjct: 178 LIPLMQSQGSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVV 237 Query: 245 AANI----DVLPMTI---YNEFTGYANFATAASLSIVLGVITWAV 282 + +I + +P+ + YNEF FA A+ L+ L ++T A+ Sbjct: 238 SGHIRGETNTIPLQVEILYNEFNITGAFAVASLLAF-LALVTLAI 281 >gi|300310984|ref|YP_003775076.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 296 Score = 71.6 bits (174), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 100/180 (55%), Gaps = 8/180 (4%) Query: 108 LQRHRFPGQALLLAMLTFPLAFPGVVVGFMVIMLAGRQGLIGALTNWLFGESLVFAYSLS 167 L R+RFPG+ ++ A++ P A P V G + L + G +G L L + A++ Sbjct: 102 LVRYRFPGKRIIDALVDLPFALPTAVAGIALTTLYSQNGWLGKLLAPL---GIKVAFTPL 158 Query: 168 GLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSG 227 G+ + + +P V+ TV E+ + LEEAA SLGA WQ V+ P +LPAL++ Sbjct: 159 GVLVALTFIGLPFVVRTVQPVLEEAERELEEAAASLGASRWQTFTRVIFPTVLPALLTGF 218 Query: 228 AICFATSVGAFGTAFTLAANI----DVLPMTIYNEFTGYANFATAASLSIVLGVITWAVL 283 A+ FA + G +G+ +A N+ ++ P+ I + Y ++A A ++++V+ ++++ +L Sbjct: 219 ALAFARASGEYGSVVFIAGNMPMVSEITPLFIVTKLEQY-DYAGATAIAMVMLLVSFVLL 277 >gi|300312150|ref|YP_003776242.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 68.9 bits (167), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 7/212 (3%) Query: 86 TLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPLAFPGVVVGFMVIMLAGRQ 145 TL+L++ VT L + + +L R R + + A++ PL P V+GF +++L G Q Sbjct: 14 TLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLVLMGPQ 73 Query: 146 GLIGALTNWLFGESLVFAYSLSGLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARSLGA 205 G +G LT L G L+ +S GL L L +S+P V+ + A E + E A +L A Sbjct: 74 GPVGQLTQAL-GLGLL-PFSFGGLVLASLLYSMPFVVQPLQNAFEAVGERPMEVAATLRA 131 Query: 206 RPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAANI----DVLPMTIYNEFTG 261 P V +P P +++ + FA +VG FG + NI VL M IY+ Sbjct: 132 SPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDHVEA 191 Query: 262 YANFATAASLSIVLGVITWAVLALARSLTGSG 293 + +A A L+ + V ++ VL + L +G Sbjct: 192 F-EYAQAHRLAGAMLVFSFLVLLVMMRLGRAG 222 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 98/205 (47%), Gaps = 9/205 (4%) Query: 83 LVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPLAFPGVVVGFMVIMLA 142 L+ +L ++ T L + V L R R + + ++LT PL P V+G+ +++L Sbjct: 8 LLLSLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLLVLF 67 Query: 143 GRQGLIGALTNWLFGESLVFAYSLSGLFLGYLYFSIPRVILTVVAAAEKLDPSLEEAARS 202 GR+G +GA WL + ++ G L + P V+ + AA E +D +E+AAR Sbjct: 68 GRRGALGA---WLERMGIELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQMEDAARV 124 Query: 203 LGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAANI----DVLPMTIYNE 258 LG V V LP + +++ + FA ++G FG +A N+ L + IY Sbjct: 125 LGVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAIYEA 184 Query: 259 FTGYANFATAASLSIVLGVITWAVL 283 A +A+L +V+ IT VL Sbjct: 185 VQ--AGDDGSATLLVVITSITCIVL 207 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 761,113 Number of extensions: 25121 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 179 Number of HSP's successfully gapped: 10 Length of query: 298 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 213 Effective length of database: 1,217,395 Effective search space: 259305135 Effective search space used: 259305135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)