BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0116.p
         (335 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmi...   683   0.0  
gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmi...    72   5e-14

>gi|300309933|ref|YP_003774025.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 335

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/335 (99%), Positives = 335/335 (100%)

Query: 1   MFLKRVIQTAAGALLLSASLAAQAQTAICYNCPPEWADWAAQIKAIKEKTGVTVPPDNKN 60
           MFLKRVIQTAAGALLLSASLAAQAQTAICYNCPPEWADWAAQIKAIKEKTGVTVPPDNKN
Sbjct: 1   MFLKRVIQTAAGALLLSASLAAQAQTAICYNCPPEWADWAAQIKAIKEKTGVTVPPDNKN 60

Query: 61  SGQALAQLTAEKASPVADFAYLGVSFGIEAKNKDLVAAYKPAHWNDIPNGLKDPDGYWFT 120
           SGQALAQLTAEKASPVADFAYLGVSFGIEAKNKDLVAAYKPAHWNDIPNGLKDPDGYWFT
Sbjct: 61  SGQALAQLTAEKASPVADFAYLGVSFGIEAKNKDLVAAYKPAHWNDIPNGLKDPDGYWFT 120

Query: 121 IHSGTMGIMVNVDALKGKPVPKSWADLQKPEYKGLIGYLDPASAFVGYVGAVAINQALGG 180
           IHSGTMGIMVNVDALKGKPVPKSWADLQKPEYKGLIGYLDPASAFVGYVGAVAINQALGG
Sbjct: 121 IHSGTMGIMVNVDALKGKPVPKSWADLQKPEYKGLIGYLDPASAFVGYVGAVAINQALGG 180

Query: 181 TLDDFSPAIGYFKNLQKNQPIVPKQTSYARLISGEIPILLGYDFDAYRAKYKDHANVAFV 240
           TLDDFSPAIGYFKNLQKNQPIVPKQTSYARLISGEIPILLGYDFDAYRAKYKDHANVAFV
Sbjct: 181 TLDDFSPAIGYFKNLQKNQPIVPKQTSYARLISGEIPILLGYDFDAYRAKYKDHANVAFV 240

Query: 241 IPSEGTVTVPYVVSLVKNAPHQAEAKKVLDFLLSDQGQAIWANAYLRPVRASAMSKEAES 300
           IPSEGTVTVPYVV+LVKNAPHQAEAKKVLDFLLSDQGQAIWANAYLRPVRASAMSKEAES
Sbjct: 241 IPSEGTVTVPYVVALVKNAPHQAEAKKVLDFLLSDQGQAIWANAYLRPVRASAMSKEAES 300

Query: 301 RFLPAAEYARAKSVDYGKMAEAQRKFGERYLAEVR 335
           RFLPAAEYARAKSVDYGKMAEAQRKFGERYLAEVR
Sbjct: 301 RFLPAAEYARAKSVDYGKMAEAQRKFGERYLAEVR 335


>gi|300311545|ref|YP_003775637.1| Fe3+ ABC transporter periplasmic
           protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 30/254 (11%)

Query: 42  QIKAIKEKTGVTVPPDNKNSGQALAQLTAEKASPVADFAYLGVSFGIEAKNKD-LVAAYK 100
           +IK +++ TG+             A+L AEKA+P AD  +   +  +   +K+ ++  Y 
Sbjct: 84  EIKWVRDSTGIVT-----------AKLLAEKANPQADVIWGLAATSLALLDKEGMLMPYA 132

Query: 101 PAHWNDIPNGLKDPDG--YWFTIHSGTMGIMVN-VDALK-GKPVPKSWADLQKPEYKGLI 156
           P   + I    +       W  +      I  N V+A K G P P SWADL KP Y G I
Sbjct: 133 PQGLSAIDAKYRSAANPPAWVGMDVWASAICFNTVEAQKQGLPKPTSWADLTKPVYAGKI 192

Query: 157 GYLDPASAFVGYVGAVAINQALG-----GTLDDFSPAIGYFKNLQKNQPIVPKQTSYARL 211
              +PAS+  GY+   A  Q +G       +D     IG + +   ++P   KQ +    
Sbjct: 193 VMPNPASSGTGYLDVSAWLQMMGEDKGWAYMDALHKNIGQYTH-SGSKPC--KQAA---- 245

Query: 212 ISGEIPILLGYDFDAYRAKYKDHANVAFVIPSEGTVTVPYVVSLVKNAPHQAEAKKVLDF 271
            +GE PI + +++ A + K K+ A +  ++PSEG        ++VK + H   AKK+ DF
Sbjct: 246 -TGEFPIGIAFEYRAVKTK-KEGAPIDVILPSEGLGWDIEATAIVKGSKHLEAAKKLADF 303

Query: 272 LLSDQGQAIWANAY 285
             S +  A++   +
Sbjct: 304 SASKEAMALYEKNF 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,041,357
Number of extensions: 45332
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 2
Length of query: 335
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 249
Effective length of database: 1,212,660
Effective search space: 301952340
Effective search space used: 301952340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)