BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0107.p
         (418 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309924|ref|YP_003774016.1| N6-adenine-specific DNA methyla...   863   0.0  

>gi|300309924|ref|YP_003774016.1| N6-adenine-specific DNA methylase
           [Herbaspirillum seropedicae SmR1]
          Length = 418

 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/418 (99%), Positives = 418/418 (100%)

Query: 1   MQSPDTNYSYFCPCPRGLEAALAEELNEIAQHAGPAANLKVHNQVPGGVHCSGTLLAAYQ 60
           MQSPDTNYSYFCPCPRGLEAALAEELNEIAQHAGPAANLKVHNQVPGGVHCSGTLLAAYQ
Sbjct: 1   MQSPDTNYSYFCPCPRGLEAALAEELNEIAQHAGPAANLKVHNQVPGGVHCSGTLLAAYQ 60

Query: 61  MNLHSRIASRVLLRMGHGSYKNENDIYDLTLAQAWEDWFKVSHTIRVDLTAVKSPLRSLE 120
           MNLHSRIASRVLLRMGHGSYKNENDIYDLTLAQAWEDWFKVSHTIRVDLTAVKSPLRSLE
Sbjct: 61  MNLHSRIASRVLLRMGHGSYKNENDIYDLTLAQAWEDWFKVSHTIRVDLTAVKSPLRSLE 120

Query: 121 FTTLKIKDAICDRFLDQFKLRPSVNTRTPDMRIAGFVDAHNFTVYLDTSGEALFKRGWRE 180
           FTTLKIKDAICDRFLDQFKLRPSVNTRTPDMRIAGFVDAHNFTVYLDTSGEALFKRGWRE
Sbjct: 121 FTTLKIKDAICDRFLDQFKLRPSVNTRTPDMRIAGFVDAHNFTVYLDTSGEALFKRGWRE 180

Query: 181 ETGDAPLRENLAAGLLRTAGWKPGVPLFDPMCGSGTILAEAAQIIAGVPPGARRRFAFEK 240
           ETGDAPLRENLAAGLLRTAGWKPGVPLFDPMCGSGTILAEAAQIIAGVPPGARRRFAFEK
Sbjct: 181 ETGDAPLRENLAAGLLRTAGWKPGVPLFDPMCGSGTILAEAAQIIAGVPPGARRRFAFEK 240

Query: 241 FSNFDADAWFAIKGDFKPNPIPTTPTLFGSDISGDMVELTRKNLVRAGVHFEVPLKQIEA 300
           FSNFDADAWFAIKGDFKPNPIPTTPTLFGSDISGDMVELTRKNLVRAGVHFEVPLKQIEA
Sbjct: 241 FSNFDADAWFAIKGDFKPNPIPTTPTLFGSDISGDMVELTRKNLVRAGVHFEVPLKQIEA 300

Query: 301 QEIKPPVDAEGKPLVGIILSNPPYGERIGVRGDRALPTEELFAQFFSAFSSTLKQRFSGW 360
           QEIKPPVDAEGKPLVGIILSNPPYGERIGVRGDRALPTEELFAQFFSAFSSTLKQRF+GW
Sbjct: 301 QEIKPPVDAEGKPLVGIILSNPPYGERIGVRGDRALPTEELFAQFFSAFSSTLKQRFAGW 360

Query: 361 SVFLFSADLGLPKLMRLKESRKTPFFNGALECRLFRFDMVAGYNRREEAKPVSRDSED 418
           SVFLFSADLGLPKLMRLKESRKTPFFNGALECRLFRFDMVAGYNRREEAKPVSRDSED
Sbjct: 361 SVFLFSADLGLPKLMRLKESRKTPFFNGALECRLFRFDMVAGYNRREEAKPVSRDSED 418


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,349,428
Number of extensions: 57437
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,203,190
Effective search space: 397052700
Effective search space used: 397052700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)