BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0102.p (244 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein... 492 e-140 gi|300310595|ref|YP_003774687.1| 3-oxoacyl-(acyl-carrier protein... 223 1e-59 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 132 3e-32 gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum s... 126 2e-30 gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein... 125 3e-30 >gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein) reductase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 492 bits (1267), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/244 (99%), Positives = 242/244 (99%) Query: 1 MTYSRASYDFGDCVAVVTGGHGGIGAAISARLAAGGAQVVVWDQHHDAASPYRQQSIDIT 60 MTYSRASYDFGDCVAVVTGGHGGIGAAISARLAAGGAQVVVWDQHHDAASPYRQQSIDIT Sbjct: 1 MTYSRASYDFGDCVAVVTGGHGGIGAAISARLAAGGAQVVVWDQHHDAASPYRQQSIDIT 60 Query: 61 DAPAVMQAAQELLADTGRIDFLINNAGYAGPTVPLDEYDVGEWHRIVQVNLLGVFHACRS 120 DAPAVMQAAQELLADTGRIDFLINNAGYAGPTVPLDEYDVGEWHRIVQVNLLGVFHACRS Sbjct: 61 DAPAVMQAAQELLADTGRIDFLINNAGYAGPTVPLDEYDVGEWHRIVQVNLLGVFHACRS 120 Query: 121 VTPAMRAAGRGRIVNIASLAGKEGTPNASAYSAAKAGVLALTKSLGKELAESGVLVNAIA 180 VTPAMRAA RGRIVNIASLAGKEGTPNASAYSAAKAGVLALTKSLGKELAESGVLVNAIA Sbjct: 121 VTPAMRAARRGRIVNIASLAGKEGTPNASAYSAAKAGVLALTKSLGKELAESGVLVNAIA 180 Query: 181 PAAVKTALLEQMSPAHVQTMIAKSPMHRLGSVDEVADMCAWLCSGSCSFNTGAVFDLSGG 240 PAAVKTALL QMSPAHVQTMIAKSPMHRLGSVDEVADMCAWLCSGSCSFNTGAVFDLSGG Sbjct: 181 PAAVKTALLGQMSPAHVQTMIAKSPMHRLGSVDEVADMCAWLCSGSCSFNTGAVFDLSGG 240 Query: 241 RATY 244 RATY Sbjct: 241 RATY 244 >gi|300310595|ref|YP_003774687.1| 3-oxoacyl-(acyl-carrier protein) reductase [Herbaspirillum seropedicae SmR1] Length = 250 Score = 223 bits (568), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/247 (47%), Positives = 153/247 (61%), Gaps = 10/247 (4%) Query: 8 YDFGDCVAVVTGGHGGIGAAISARLAAGGAQVVVWDQHHDAASPYRQQ----------SI 57 YDF A++TGG G G A++ RL G A+VV+WD A + R++ + Sbjct: 4 YDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDMDEKALAEARRKLESLGNVETVKV 63 Query: 58 DITDAPAVMQAAQELLADTGRIDFLINNAGYAGPTVPLDEYDVGEWHRIVQVNLLGVFHA 117 DI+ V QA + T ID L+++AG AG P+ EY EW R++ ++L G F+ Sbjct: 64 DISSQAEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDLNGAFYV 123 Query: 118 CRSVTPAMRAAGRGRIVNIASLAGKEGTPNASAYSAAKAGVLALTKSLGKELAESGVLVN 177 + V M A GRIVNIAS+AGKEG P ASAYSAAKAG++ALTKSLGKE A + VN Sbjct: 124 NQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATKNIAVN 183 Query: 178 AIAPAAVKTALLEQMSPAHVQTMIAKSPMHRLGSVDEVADMCAWLCSGSCSFNTGAVFDL 237 AI PAA +T +LEQ + AH+ M++K P R V+E+A M AWL S SF T +VFDL Sbjct: 184 AITPAAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASVFDL 243 Query: 238 SGGRATY 244 SGGRATY Sbjct: 244 SGGRATY 250 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 132 bits (332), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 17/241 (7%) Query: 14 VAVVTGGHGGIGAAISARLAAGGAQVVVW-----DQHHDAASPYRQQSIDI-------TD 61 +A VTGG GGIG AI RL G VV + + R+Q DI ++ Sbjct: 5 IAYVTGGMGGIGTAICTRLCKDGYTVVAGCGPNSTRKDKWLATMREQGFDIHASEGNVSN 64 Query: 62 APAVMQAAQELLADTGRIDFLINNAGYA--GPTVPLDEYDVGEWHRIVQVNLLGVFHACR 119 + A +++ A+ G +D L+NNAG G + + D W ++ NL +F+ + Sbjct: 65 WESTKAAFEKVRAEIGEVDVLVNNAGITRDGQFRKMSKDD---WDAVIDTNLNSLFNVTK 121 Query: 120 SVTPAMRAAGRGRIVNIASLAGKEGTPNASAYSAAKAGVLALTKSLGKELAESGVLVNAI 179 V M G GRI+NI+S+ G++G + YS AKAG+ T +L +E+A GV VN + Sbjct: 122 QVIEGMCERGFGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTV 181 Query: 180 APAAVKTALLEQMSPAHVQTMIAKSPMHRLGSVDEVADMCAWLCSGSCSFNTGAVFDLSG 239 +P + T ++ + P ++ +++ P+ RLG +E+A + AW+ S + TG+ F L+G Sbjct: 182 SPGYIGTDMVRAIRPEVLEKIVSGIPVKRLGEPEEIASIVAWIASSEGGYATGSDFSLNG 241 Query: 240 G 240 G Sbjct: 242 G 242 >gi|300310442|ref|YP_003774534.1| dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 126 bits (316), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 127/242 (52%), Gaps = 14/242 (5%) Query: 12 DCVAVVTGGHG--GIGAAISARLAAGGAQVVVWD--------QHHDAASPYRQQSIDITD 61 D VAV+TGG G G+G A + +A GA+VVV D S + D+TD Sbjct: 5 DKVAVITGGAGINGLGYATARLMAEQGARVVVLDLAQADPAAAAARIGSQHLGLVADVTD 64 Query: 62 APAVMQAAQELLADTGRIDFLINNAGYAGPTVPLDEYDVGEWHRIVQVNLLGVFHACRSV 121 + AA +L GRID L+NNAG P L E ++ RI+ V+L G + ++V Sbjct: 65 KASCETAAAAILQQFGRIDILVNNAGITQPVKTL-EITGADYDRILDVSLRGTLYMSQAV 123 Query: 122 TPAMRAAGRGRIVNIASLAGKEG--TPNASAYSAAKAGVLALTKSLGKELAESGVLVNAI 179 PAMRA G I+ I+S++ + G YSAAKAGVL L +++ +E G+ VN+I Sbjct: 124 LPAMRAQQNGSIICISSVSAQRGGGILGGPHYSAAKAGVLGLARAMAREFGPEGIRVNSI 183 Query: 180 APAAVKTALLEQMSPAHVQTMIAKS-PMHRLGSVDEVADMCAWLCSGSCSFNTGAVFDLS 238 P + T +++ + IA++ P+ RLG D++ C +L S + TG D++ Sbjct: 184 TPGLIGTDIIKGKLTEEKKAEIAETIPLARLGRADDIGGACVFLGSDLSQYCTGITLDVN 243 Query: 239 GG 240 GG Sbjct: 244 GG 245 >gi|300313110|ref|YP_003777202.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 256 Score = 125 bits (314), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 125/244 (51%), Gaps = 13/244 (5%) Query: 9 DFGDCVAVVTGGHGGIGAAISARLAAGGAQVVVWDQHHDAASPYRQQ-----------SI 57 D G VA+VTGG GIGA+IS +LAA G V+V D + DAAS + Sbjct: 5 DSGARVALVTGGAMGIGASISQQLAAKGHTVLVADINLDAASKTADALVAAGHRAAPLQM 64 Query: 58 DITDAPAVMQAAQELLADTGRIDFLINNAGYAGPTVPLDEYDVGEWHRIVQVNLLGVFHA 117 D+ ++ A + D GR D L+NNAG A LD Y + W + + VN+ GV A Sbjct: 65 DLGSPESIAAAFAHIEKDYGRCDVLVNNAGVARTYSFLD-YPLENWLQTMNVNVTGVLLA 123 Query: 118 CRSVTPAMRAAGRGRIVNIASLAGKEGTPNASAYSAAKAGVLALTKSLGKELAESGVLVN 177 + M GRIVNI+S++G +AY +KA V+ LT+ + ELA+ G+ VN Sbjct: 124 GQHAARLMVKQQWGRIVNISSISGIRAGAGRTAYGTSKAAVIGLTRQMAIELAQYGITVN 183 Query: 178 AIAPAAVKTALLEQMSPAHVQTMIAK-SPMHRLGSVDEVADMCAWLCSGSCSFNTGAVFD 236 ++AP V T + + M + + PM R G+ DE+A +L + ++ TG V Sbjct: 184 SVAPGPVDTPMTQAMHSEQTRESYYRLVPMRRYGTTDEIASAVCYLAAEESAYITGHVIP 243 Query: 237 LSGG 240 + GG Sbjct: 244 VDGG 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.131 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 711,182 Number of extensions: 28116 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 50 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 50 Length of query: 244 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 161 Effective length of database: 1,226,865 Effective search space: 197525265 Effective search space used: 197525265 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)