BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0092.p
         (285 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase [Herbasp...   585   e-168
gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase dom...   159   2e-40

>gi|300309908|ref|YP_003774000.1| Zn-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 331

 Score =  585 bits (1507), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/285 (100%), Positives = 285/285 (100%)

Query: 1   VLVGDFKVTVLTDGTTPVPFDQIMHGMDKHALTAQFRDAGEPVNRETSINAFLIDTGERR 60
           VLVGDFKVTVLTDGTTPVPFDQIMHGMDKHALTAQFRDAGEPVNRETSINAFLIDTGERR
Sbjct: 47  VLVGDFKVTVLTDGTTPVPFDQIMHGMDKHALTAQFRDAGEPVNRETSINAFLIDTGERR 106

Query: 61  ILIDSGAGKVFGSCCGHLVETLKIAGYDPASIDAVLLTHVHGDHSAGLARDGERQFPNAD 120
           ILIDSGAGKVFGSCCGHLVETLKIAGYDPASIDAVLLTHVHGDHSAGLARDGERQFPNAD
Sbjct: 107 ILIDSGAGKVFGSCCGHLVETLKIAGYDPASIDAVLLTHVHGDHSAGLARDGERQFPNAD 166

Query: 121 VFLAKSELDYWMSDSAKAQAKASHQQMFVEGRAALAPYLAAGRIRTFSGRTTLFPGIEAI 180
           VFLAKSELDYWMSDSAKAQAKASHQQMFVEGRAALAPYLAAGRIRTFSGRTTLFPGIEAI
Sbjct: 167 VFLAKSELDYWMSDSAKAQAKASHQQMFVEGRAALAPYLAAGRIRTFSGRTTLFPGIEAI 226

Query: 181 PAPGHTPGHSFYDIESRGRRMRVVGDIIHAAEVQLPHPNVTVDFDADEAQAARTRIAALE 240
           PAPGHTPGHSFYDIESRGRRMRVVGDIIHAAEVQLPHPNVTVDFDADEAQAARTRIAALE
Sbjct: 227 PAPGHTPGHSFYDIESRGRRMRVVGDIIHAAEVQLPHPNVTVDFDADEAQAARTRIAALE 286

Query: 241 ALAQSHELVAGPHLSFPGLGHILRAGDGFAWAPIPYSAVVRDVGN 285
           ALAQSHELVAGPHLSFPGLGHILRAGDGFAWAPIPYSAVVRDVGN
Sbjct: 287 ALAQSHELVAGPHLSFPGLGHILRAGDGFAWAPIPYSAVVRDVGN 331


>gi|300312891|ref|YP_003776983.1| Zn-dependent beta-lactamase domain
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  159 bits (403), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 142/268 (52%), Gaps = 6/268 (2%)

Query: 3   VGDFKVTVLTDGTTPVPFDQIMHGMDKHALTAQFRDAGEPVNRETSINAFLIDTGERRIL 62
           +GDF VT ++DG    P  +++  +D    T     AG        IN +LI +  + +L
Sbjct: 8   IGDFSVTAISDGFLSAPL-ELLSNIDPAEATRLQHAAGMSDPSAIHINCYLIRSPTQTVL 66

Query: 63  IDSGAGKVFGSCCGHLVETLKIAGYDPASIDAVLLTHVHGDHSAGLARD-GERQFPNADV 121
           +D+GAG  F    G L + LK AG  P+ ID VLLTH H DH  GL    G+R FP+A++
Sbjct: 67  VDAGAGG-FKQWGGRLQDNLKRAGVLPSDIDTVLLTHAHPDHIGGLLDSAGDRAFPDAEL 125

Query: 122 FLAKSELDYWMSDSAKAQAKASHQQMFVEGRAALAPYLAAGRIRTFSGRTTLFPGIEAIP 181
            +   ELD+W +D+   +A    +  F+  R     Y    R+RTF+G   L PGI A  
Sbjct: 126 VVQGQELDFWENDANFCRASERARGNFIFARRVFVKY--RDRLRTFAGGEVL-PGISAQL 182

Query: 182 APGHTPGHSFYDIESRGRRMRVVGDIIHAAEVQLPHPNVTVDFDADEAQAARTRIAALEA 241
            PGHT GH  Y I S G+ + + GDI+H   +Q+  P+V++ FD D   A  TR+  L+ 
Sbjct: 183 LPGHTDGHCGYHINSNGQGLLIWGDIVHFPHLQIARPDVSIAFDLDPHLATATRVHLLDM 242

Query: 242 LAQSHELVAGPHLSFPGLGHILRAGDGF 269
           ++    L+AG HL   G   I+R G  +
Sbjct: 243 VSADQLLIAGMHLGEEGFVQIVRTGKSY 270


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 971,456
Number of extensions: 41749
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 285
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 201
Effective length of database: 1,222,130
Effective search space: 245648130
Effective search space used: 245648130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)