BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0088.p (651 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309904|ref|YP_003773996.1| aspartate tRNAAsn/Glu-tRNAGln a... 1290 0.0 gi|300311728|ref|YP_003775820.1| indole acetamide hydrolase [Her... 181 2e-46 gi|300313942|ref|YP_003778034.1| Asp-tRNAAsn/Glu-tRNAGln amidotr... 129 5e-31 gi|300309358|ref|YP_003773450.1| amidase family protein [Herbasp... 122 6e-29 gi|300312309|ref|YP_003776401.1| 6-aminohexanoate-cyclic-dimer h... 118 1e-27 >gi|300309904|ref|YP_003773996.1| aspartate tRNAAsn/Glu-tRNAGln amidotransferase subunit A-like protein [Herbaspirillum seropedicae SmR1] Length = 651 Score = 1290 bits (3337), Expect = 0.0, Method: Compositional matrix adjust. Identities = 642/651 (98%), Positives = 648/651 (99%) Query: 1 MKYHSNNTSSFARASSVVFTAMLLGAMTQTSFAQGKETASQRKLAEDPVFEASITHLQSA 60 MKYHSNNTSSFARASSVVFTAMLLGAMTQTSFAQGKETASQR+LA+DPVFEASITHLQSA Sbjct: 1 MKYHSNNTSSFARASSVVFTAMLLGAMTQTSFAQGKETASQRRLAQDPVFEASITHLQSA 60 Query: 61 QDAGRATSRSLVLAYLARIRAYDQQGPALNAIVTLNPKALEEADQLDRERRQSGPRGPLH 120 QDAGRATSRSLVLAYLARIRAYDQQGP+LNAIVTLNPKALEEADQLDRERRQSGPRGPLH Sbjct: 61 QDAGRATSRSLVLAYLARIRAYDQQGPSLNAIVTLNPKALEEADQLDRERRQSGPRGPLH 120 Query: 121 GIPILVKDNYDTVDMPTTGGTLALATLQAQADAFQVKRLREAGAVILGKTTMHELAAGVT 180 GIPILVKDNYDTVDMPTTGGTLALATLQAQADAFQVKRLREAGAVILGKTTMHELAAGVT Sbjct: 121 GIPILVKDNYDTVDMPTTGGTLALATLQAQADAFQVKRLREAGAVILGKTTMHELAAGVT 180 Query: 181 TVSSLTGFTRNPYDPRRAPGGSSGGTGAAVAASFAAAGMGSDTCGSIRIPAAHQNLFGLR 240 TVSSLTGFTRNPYDPRRAPGGSSGGTGAAVAASFAAAGMGSDTCGSIRIPAAHQNLFGLR Sbjct: 181 TVSSLTGFTRNPYDPRRAPGGSSGGTGAAVAASFAAAGMGSDTCGSIRIPAAHQNLFGLR 240 Query: 241 TTRGLASRSGVMPLSSTQDVAAPLARSVEDLAIMLDATVGSDPQDSSTVGANGHVPKSYR 300 TTRGLASRSGVMPLSSTQDVAAPLARSVEDLAIMLDATVGSDPQDSSTV ANGH+PKSYR Sbjct: 241 TTRGLASRSGVMPLSSTQDVAAPLARSVEDLAIMLDATVGSDPQDSSTVDANGHIPKSYR 300 Query: 301 DGLRADSLQGARIGVLRALFGAAPEDAEVSAAINKALQQLKDQGAIVTDVTIPELDGLLS 360 DGLRADSLQGARIGVLRALFGAAPEDAEVSAAINKALQQLKDQGAIVTDVTIPELDGLLS Sbjct: 301 DGLRADSLQGARIGVLRALFGAAPEDAEVSAAINKALQQLKDQGAIVTDVTIPELDGLLS 360 Query: 361 GSSIIPYEFKYDLGAYLQSHPGAPVGSLGEILARGMEHELLEAGLRLRNSVDLQNPKDKE 420 GSSIIPYEFKYDLGAYLQSHPGAPVGSLGEILARGMEHELLEAGLRLRNSVDLQNPKDKE Sbjct: 361 GSSIIPYEFKYDLGAYLQSHPGAPVGSLGEILARGMEHELLEAGLRLRNSVDLQNPKDKE 420 Query: 421 ELEKVMHKRSALKSLMTDVMQRNHLDTLVYPTIQRKAALIGEPQGGAMNCQLSATTGLPA 480 ELEKVM KRSALKSLMTDVMQ+NHLDTLVYPTIQRKAALIGEPQGGAMNCQLSATTGLPA Sbjct: 421 ELEKVMLKRSALKSLMTDVMQKNHLDTLVYPTIQRKAALIGEPQGGAMNCQLSATTGLPA 480 Query: 481 LALPVGFTEDGLPVSLELLAPEFAEPALLGLAYGWEQKIGPRRPPYSTPALVAGKAPGLR 540 LALPVGFTEDGLPVSLELLAPEFAEPALLGLAYGWEQKIGPRR PYSTPALVAGKAPGLR Sbjct: 481 LALPVGFTEDGLPVSLELLAPEFAEPALLGLAYGWEQKIGPRRSPYSTPALVAGKAPGLR 540 Query: 541 RIKPIVLEQPGDASVRVELAYDPVTARLDYQASARKVAASDVISLALQRGEADKPGPVVA 600 RIKPIVL+QPGDASVRVELAYDPVTARLDYQASARKVAASDVISLALQRGEADKPGPVVA Sbjct: 541 RIKPIVLDQPGDASVRVELAYDPVTARLDYQASARKVAASDVISLALQRGEADKPGPVVA 600 Query: 601 NLLRQHQKSVKASIVLQGKDREALLAGKLYVDFYTRSAPLGAGRQPLVLAD 651 NLLRQHQKSVKASIVLQGKDREALLAGKLYVDFYTRSAPLGAGRQPLVLAD Sbjct: 601 NLLRQHQKSVKASIVLQGKDREALLAGKLYVDFYTRSAPLGAGRQPLVLAD 651 >gi|300311728|ref|YP_003775820.1| indole acetamide hydrolase [Herbaspirillum seropedicae SmR1] Length = 468 Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 166/469 (35%), Positives = 237/469 (50%), Gaps = 44/469 (9%) Query: 64 GRATSRSLVLAYLARIRAYDQQGPALNAIVTLNPKALE-EADQLDRERRQSGPRGPLHGI 122 G + R L Y+ + A + LN + +P+ L +A LD + G GPL GI Sbjct: 14 GLSDRRFSCLEYVDALIAETEAQWDLNCYLQRDPEQLRSQARMLD----EQGGHGPLSGI 69 Query: 123 PILVKDNYDTVDMPTTGGTLALATLQAQADAFQVKRLREAGAVILGKTTMHELAAGVTTV 182 PI +KDN D + +T GT AL Q A V+ L AGA+ GK MHELA G+T Sbjct: 70 PIAIKDNIDVAGIASTAGTAALRNNVPQRHATVVEYLFGAGALHAGKANMHELAFGITNN 129 Query: 183 SSLTGFTRNPYDPRRAPGGSSGGTGAAVAASFAAAGMGSDTCGSIRIPAAHQNLFGLRTT 242 + + G RNPYD GGSSGG GA +AA A A +G+DT GS+RIPAA + GLR T Sbjct: 130 NGVFGPCRNPYDAELIAGGSSGGCGALLAARLAPAAVGTDTGGSVRIPAALCGVVGLRPT 189 Query: 243 RGLASRSGVMPLSSTQDVAAPLARSVEDLAIMLDATVGSDPQDSSTVGANGHVPKSYRDG 302 S+ GV+P+S T+D P+ARSV D+A++ GS +DS+ + A +P S Sbjct: 190 SRRYSQHGVVPISHTRDTPGPMARSVADVALLDQIMAGS--RDSAPLLA---LPPSQ--- 241 Query: 303 LRADSLQGARIGVLRALFGAAPEDAEVSAAINKALQQLKDQGAIVTDVTIPELDGL--LS 360 R+GVLR E+ EV A N AL QL++ G + DV +P L L + Sbjct: 242 --------LRLGVLRNPSWQGLEE-EVEANANAALMQLREAGVELVDVDLPTLAPLSHAA 292 Query: 361 GSSIIPYEFKYDLGAYLQSHPGAPVGSLGEILARGMEHELLEAGLRLRNSVDLQNPKDKE 420 G +I+ +EF DL AYLQ+ V + +LA E+ + L P + Sbjct: 293 GFAIVLHEFLIDLPAYLQASDARDV--IKRVLA-----EVGSPDVARIIQATLDQPVPEH 345 Query: 421 ELEKVMHKRSALKSLMTDVMQRNHLDTLVYPTIQRKAALIGEPQGGAM------------ 468 + +R +++L D + +D L++PT A +GE A+ Sbjct: 346 AYRLALEQRRTMQALYRDCFRSQGVDALIFPTTALTARPLGEDDTVALRGERVPTFPAFA 405 Query: 469 -NCQLSATTGLPALALPVGFTEDGLPVSLELLAPEFAEPALLGLAYGWE 516 N ++ GLP++++PVG +E GLPV LEL PE ++ LL +A E Sbjct: 406 RNADGASIAGLPSISIPVGLSEYGLPVGLELDGPEGSDRRLLQVAASLE 454 >gi|300313942|ref|YP_003778034.1| Asp-tRNAAsn/Glu-tRNAGln amidotransferase subunit A [Herbaspirillum seropedicae SmR1] Length = 488 Score = 129 bits (325), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 143/485 (29%), Positives = 231/485 (47%), Gaps = 31/485 (6%) Query: 53 SITHLQSAQDAGRATSRSLVLAYLARIRAYDQQGPALNAIVTLNPKALEEADQLDRERRQ 112 ++ L + A + ++ L +L RI A D LNA + ++ + ++ R Sbjct: 5 TLKELSAQLQARKISATELATLFLDRIDASD-----LNAFLHVDRELTLAQAKVADSRLS 59 Query: 113 SGPRGPLHGIPILVKDNYDTVDMPTTGGTLALATLQAQADAFQVKRLREAGAVILGKTTM 172 G L G+PI KD + T TT G+ L + DA V++ AG V LGK Sbjct: 60 DNNAGQLTGVPIAHKDIFVTRGWRTTAGSRMLDNYVSPFDATVVEQFNAAGMVTLGKLNC 119 Query: 173 HELAAGVTTVSSLTGFTRNPYDPRRAPGGSSGGTGAAVAASFAAAGMGSDTCGSIRIPAA 232 E A G +S G T NP+D R PGGSSGG+ AAVAA A A +DT GSIR PA+ Sbjct: 120 DEFAMGSGNENSYFGPTLNPWDKRAVPGGSSGGSAAAVAARLAPAATATDTGGSIRQPAS 179 Query: 233 HQNLFGLRTTRGLASRSGVMPLSSTQDVAAPLARSVEDLAIMLDATVGSDPQDSSTVGAN 292 + G++ T G SR G++ +S+ D P+A++ ED ++L+A G D +DS+++ Sbjct: 180 LCGVTGIKPTYGSVSRYGMIAFASSLDQGGPIAKTAEDCGLLLNAMTGFDERDSTSL--- 236 Query: 293 GHVPKSYRDGLRADSLQGARIGVLRALFGAAPEDAEVSAAINKALQQLKDQGAIVTDVTI 352 PK DSLQG RIGV + FGA A+V AA+ AL + + GA + ++++ Sbjct: 237 -QRPKEDFTRSLNDSLQGLRIGVPKEFFGAGLA-ADVEAAVRAALSEFEKLGAQLVEISL 294 Query: 353 PELDGLLSGSSII-PYEFKYDLGAY---LQSHPGAPVGSLGEIL----ARGMEHELLEAG 404 P+ + + +I P E +L + H A G+L ++ A G E ++ Sbjct: 295 PKTELSIPVYYVIAPAEASSNLSRFDGVRYGHRAADYGNLDDMYRKSRAEGFGEE-VKRR 353 Query: 405 LRLRNSVDLQNPKDKEELEKVMHKRSALKSLMTDVMQRN-HLDTLVYPTIQRKAALIGEP 463 + + + V D L+ +R + + N D ++ P A +G+ Sbjct: 354 ILVGSYVLSHGYYDAYYLQAQKIRRLIAQDFQNALAGANRQCDVIMGPVSPTVAWDLGDK 413 Query: 464 QGGAMNCQL-------SATTGLPALALPVGF---TEDG-LPVSLELLAPEFAEPALLGLA 512 + L ++ GLP +++P GF ++G PV L+++ F E LL +A Sbjct: 414 TNDPVANYLADIFTLSTSLAGLPGMSIPCGFGQGEKNGKRPVGLQIIGNYFDEARLLNVA 473 Query: 513 YGWEQ 517 + ++Q Sbjct: 474 HQFQQ 478 >gi|300309358|ref|YP_003773450.1| amidase family protein [Herbaspirillum seropedicae SmR1] Length = 482 Score = 122 bits (307), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 105/296 (35%), Positives = 145/296 (48%), Gaps = 14/296 (4%) Query: 57 LQSAQDAGRATSRSLVLAYLARIRAYDQQGPALNAIVTLNP--KALEEADQLDRERRQSG 114 L +A + + R ++ AYL I ++ P +NAIV+L P + L+EA + D+ Q Sbjct: 12 LSAAIRSKEVSCREVMQAYLEHI---EKMNPHVNAIVSLRPPEELLDEAKRADQLLAQGR 68 Query: 115 PRGPLHGIPILVKDNYDTVDMPTTGGTLALATLQAQADAFQVKRLREAGAVILGKTTMHE 174 G +HG+P KD +PT+ G+ + Q+DA V R+R+AGA+ +GKT + E Sbjct: 69 YLGWMHGMPQAPKDLASCKGLPTSKGSPLSSMAPDQSDATCVARVRDAGAIFIGKTNVSE 128 Query: 175 LAAGVTTVSSLTGFTRNPYDPRRAPGGSSGGTGAAVAASFAAAGMGSDTCGSIRIPAAHQ 234 G + + L G TRN YD R GGSSGG GAA+A GSD GS+R PAA Sbjct: 129 FGLGSNSYNPLFGVTRNAYDFSRIAGGSSGGAGAALAMRMLPVADGSDMMGSLRNPAAFN 188 Query: 235 NLFGLRTTRG-LASRSGVMPLSSTQDVAAPLARSVEDLAIMLDATVGSDPQD--SSTVGA 291 N++G R T+G + SG P+ R+V D+A + G DPQ SS Sbjct: 189 NVYGFRPTQGRVPYGSGGELFLQQLSTEGPMGRTVADVARLFATQAGYDPQCPLSSDTDV 248 Query: 292 NGHVPKSYRDGLRADSLQGARIGVLRALFGAAPEDAEVSAAINKALQQLKDQGAIV 347 G + RD +GARIG L G P + EV AL D G V Sbjct: 249 TGDAAQLKRD------FKGARIGWLGNYDGYLPIEEEVMVLCEAALSDFADIGCTV 298 >gi|300312309|ref|YP_003776401.1| 6-aminohexanoate-cyclic-dimer hydrolase [Herbaspirillum seropedicae SmR1] Length = 482 Score = 118 bits (296), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 147/485 (30%), Positives = 210/485 (43%), Gaps = 81/485 (16%) Query: 79 IRAYDQQGPALNAIVTLNPKALEEADQLDRERRQSG-PRGPLHGIPILVKDNYDTV-DMP 136 I +Q PALNA+ E+ L + G P GP G+P+L KD + + Sbjct: 37 IERLEQVNPALNAVA-------EKLYHLGEQSVAQGLPDGPFRGVPLLTKDLFTPLAGAR 89 Query: 137 TTGGTLALATLQAQADAFQVKRLREAGAVILGKTTMHELAAGVTTVSSLTGFTRNPYDPR 196 + G+L L DA V RL++AG I G TT E TT S L G TRNP+ Sbjct: 90 MSNGSLLLKDNVMPVDAELVTRLKKAGFTIFGTTTSPEFGTSYTTESRLFGATRNPWSLD 149 Query: 197 RAPGGSSGGTGAAVAASFAAAGMGSDTCGSIRIPAAHQNLFGLRTTRGLASRSGVMPLS- 255 + GGSSG A VAA G+D GS+R+PA+ +FGL+ +RGL MP+ Sbjct: 150 HSCGGSSGAAAALVAARVLPIAHGNDGGGSLRVPASACGVFGLKPSRGL------MPMGP 203 Query: 256 ---------STQDVAAPLARSVEDLAIMLDATVGSDPQDSSTVGANGHVPKSYRDGLRAD 306 ST V ++ SV D A +LD G+D +GA P YR A Sbjct: 204 LAGEGWAGMSTSHV---MSLSVRDSAAVLDQLAGAD------LGAPYAAPH-YRQSFLAA 253 Query: 307 SL----QGARIGVLRALFGAAPEDAEVSAAINKALQQLKDQGAIVTDVTIPELDGLLSGS 362 + QG RIG++ L P + S A+ + + G V + +P +DGL Sbjct: 254 ATGAAPQGLRIGLVTHL-PPWPTHPDCSEAVQRTAALCQQLGHHVEETCLP-VDGL---- 307 Query: 363 SIIPYEFKYDLGAYLQSHPGAPVGSLGEILARGMEHELLEAGLRLRNSVDLQNPKDKEEL 422 EF YD + + G+ +L +LAR L E L R+ V L +DK +L Sbjct: 308 -----EF-YDT---VFTIIGSQTRNLMNLLARMAGQPLDEQALEARHRVIL---RDKGQL 355 Query: 423 EKVMHKRS-----ALKSLMTDVMQRNHLDTLVYPTI---------------QRKAALIGE 462 + + A M ++MQR D ++ PT+ Q A LI Sbjct: 356 SGADYAAAVDYLHAFGRRMAELMQR--YDLILTPTMAQPPARIGALTVREEQSVAELIHT 413 Query: 463 PQGGAMNCQLSATTGLPALALPVGFTEDGLPVSLELLAPEFAEPALLGLAYGWEQK--IG 520 G + L +G PA+++P+ + + GLP+ A + LL +A EQ Sbjct: 414 FHGFSPFTALCNASGQPAMSVPLHWNDQGLPIGSHFCAGFGDDTLLLAVAAQLEQAAPWA 473 Query: 521 PRRPP 525 RRPP Sbjct: 474 HRRPP 478 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.132 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,853,650 Number of extensions: 73203 Number of successful extensions: 317 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 11 Length of query: 651 Length of database: 1,619,870 Length adjustment: 91 Effective length of query: 560 Effective length of database: 1,188,985 Effective search space: 665831600 Effective search space used: 665831600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)