BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0067.p (825 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine k... 1667 0.0 gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine... 526 e-150 gi|300311805|ref|YP_003775897.1| two component hybrid sensor his... 324 2e-89 gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine... 280 3e-76 gi|300313027|ref|YP_003777119.1| two component transmembrane sen... 110 3e-25 >gi|300309882|ref|YP_003773974.1| multi-sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 845 Score = 1667 bits (4316), Expect = 0.0, Method: Compositional matrix adjust. Identities = 822/825 (99%), Positives = 822/825 (99%) Query: 1 LDPQWRFVFLDSPAQALLNPHGQDLLGRPIWQACPELLGSPLEECLRAVQADQGSRDAVL 60 LDPQWRFVFLDSPAQALLNPHGQDLLGRPIWQACPELLGSPLEECLRAVQADQ SRDAVL Sbjct: 21 LDPQWRFVFLDSPAQALLNPHGQDLLGRPIWQACPELLGSPLEECLRAVQADQRSRDAVL 80 Query: 61 IHPHHQPGPAYAVSCYAGAHGLSVKLRAIAAQPAAEHGLQQTRLRHEAVAELARLTDESE 120 IHPHHQPGPAYAVSCYAGAHGLSVKLRAIAAQPAAEHGLQQTRLRHEAVAELARLTDESE Sbjct: 81 IHPHHQPGPAYAVSCYAGAHGLSVKLRAIAAQPAAEHGLQQTRLRHEAVAELARLTDESE 140 Query: 121 RRRRFYETFFATTPDLAYAWDLEHRFTYANRVLLQMWGKTWDEAIGKTCLELGYEPWHAE 180 RRRRFYETFFATTPDLAYAWDLEHRFTYANRVLLQMWGKTWDEAIGKTCLELGYEPWHAE Sbjct: 141 RRRRFYETFFATTPDLAYAWDLEHRFTYANRVLLQMWGKTWDEAIGKTCLELGYEPWHAE 200 Query: 181 MHSREIEQVRATKRPVRGDVPFNGTFGRRIYDYIIFPVLGPDGEVEAVAGTTRDVTDRKH 240 MHSREIEQVRATKRPVRGDVPFNGTFGRRIYDYIIFPVLGPDGEVEAVAGTTRDVTDRKH Sbjct: 201 MHSREIEQVRATKRPVRGDVPFNGTFGRRIYDYIIFPVLGPDGEVEAVAGTTRDVTDRKH 260 Query: 241 SEARQHALLHLADAIRTTDSPQDIASAAAHIIGEALTARWVSFHTLGPQRQCQDLGQWRF 300 SEARQHALLHLADAIR TDSPQDIASAAAHIIGEALTARWVSFHTLGPQRQCQDLGQWRF Sbjct: 261 SEARQHALLHLADAIRATDSPQDIASAAAHIIGEALTARWVSFHTLGPQRQCQDLGQWRF 320 Query: 301 HRDDDAERGLQAHARRPLQRVLEQGHPMLVADVSSDARTVALADEQRELGVVSFMDVPVL 360 HRDDDAERGLQAHARRPLQRVLEQGHPMLVADVSSDARTVALADEQR LGVVSFMDVPVL Sbjct: 321 HRDDDAERGLQAHARRPLQRVLEQGHPMLVADVSSDARTVALADEQRALGVVSFMDVPVL 380 Query: 361 AQDQPVALVQVSSDAPRVWTENELAIVREVSERACAAFERIRNQRALAESEARLRAINES 420 AQDQPVALVQVSSDAPRVWTENELAIVREVSERACAAFERIRNQRALAESEARLRAINES Sbjct: 381 AQDQPVALVQVSSDAPRVWTENELAIVREVSERACAAFERIRNQRALAESEARLRAINES 440 Query: 421 LEAEVSARTRELMATEEALRHSQKIEAIGQLTGGLAHDFNNLLGGISGSLDLMRVRLVQG 480 LEAEVSARTRELMATEEALRHSQKIEAIGQLTGGLAHDFNNLLGGISGSLDLMRVRLVQG Sbjct: 441 LEAEVSARTRELMATEEALRHSQKIEAIGQLTGGLAHDFNNLLGGISGSLDLMRVRLVQG 500 Query: 481 RGEELLRYVELAARSTQRAASLTQRLLAFARRQTLAPKPTRVNALISGMEELIRRTIGPA 540 RGEELLRYVELAARSTQRAASLTQRLLAFARRQTLAPKPTRVNALISGMEELIRRTIGPA Sbjct: 501 RGEELLRYVELAARSTQRAASLTQRLLAFARRQTLAPKPTRVNALISGMEELIRRTIGPA 560 Query: 541 IVLEVVGAGGLWPTFVDGPQLESALLNLCINARDAMPGGGRLTIETANKWLDDRWAHERD 600 IVLEVVGAGGLWPTFVDGPQLESALLNLCINARDAMPGGGRLTIETANKWLDDRWAHERD Sbjct: 561 IVLEVVGAGGLWPTFVDGPQLESALLNLCINARDAMPGGGRLTIETANKWLDDRWAHERD 620 Query: 601 LPPGQYVCISVTDSGVGMPPDVLARAFDPFFTTKPIGAGTGLGLSMVYGFARQSGGQVRL 660 LPPGQYVCISVTDSGVGMPPDVLARAFDPFFTTKPIGAGTGLGLSMVYGFARQSGGQVRL Sbjct: 621 LPPGQYVCISVTDSGVGMPPDVLARAFDPFFTTKPIGAGTGLGLSMVYGFARQSGGQVRL 680 Query: 661 YSEVGQGTTVSIYLPRHQHDGDEQDEADALDETAAGDGNGEVVLVVDDEASIRMLVAEIL 720 YSEVGQGTTVSIYLPRHQHDGDEQDEADALDETAAGDGNGEVVLVVDDEASIRMLVAEIL Sbjct: 681 YSEVGQGTTVSIYLPRHQHDGDEQDEADALDETAAGDGNGEVVLVVDDEASIRMLVAEIL 740 Query: 721 SDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGRQVADAGRAARPDLHVLFI 780 SDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGRQVADAGRAARPDLHVLFI Sbjct: 741 SDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGRQVADAGRAARPDLHVLFI 800 Query: 781 TGYAENAAFDNGHLERGMQLMTKPFKMEALARRVQSILESRVAPN 825 TGYAENAAFDNGHLERGMQLMTKPFKMEALARRVQSILESRVAPN Sbjct: 801 TGYAENAAFDNGHLERGMQLMTKPFKMEALARRVQSILESRVAPN 845 >gi|300311617|ref|YP_003775709.1| PAS/PAC sensor hybrid histidine kinase response regulator protein [Herbaspirillum seropedicae SmR1] Length = 688 Score = 526 bits (1355), Expect = e-150, Method: Compositional matrix adjust. Identities = 259/407 (63%), Positives = 320/407 (78%) Query: 412 ARLRAINESLEAEVSARTRELMATEEALRHSQKIEAIGQLTGGLAHDFNNLLGGISGSLD 471 A LR +NE+LE V RT L+ EEALR +QK+EA+GQLTGGLAHDFNN+L GISGSL+ Sbjct: 274 AALRTLNETLEQRVEERTAALLNAEEALRQAQKMEAVGQLTGGLAHDFNNILAGISGSLE 333 Query: 472 LMRVRLVQGRGEELLRYVELAARSTQRAASLTQRLLAFARRQTLAPKPTRVNALISGMEE 531 LM+VRL QGR ++ R++ A + +RAA+LTQRLLAF+RRQTL PKP +N +++GM E Sbjct: 334 LMKVRLAQGRIGDIERHLNGAQSAVKRAAALTQRLLAFSRRQTLDPKPADLNRIVAGMHE 393 Query: 532 LIRRTIGPAIVLEVVGAGGLWPTFVDGPQLESALLNLCINARDAMPGGGRLTIETANKWL 591 LI R++GPAI +E + AGGLW TFVD Q+E+ALLNLCINARDAMP GGRLTIETAN+WL Sbjct: 394 LIGRSVGPAIAVETIAAGGLWHTFVDIGQMENALLNLCINARDAMPHGGRLTIETANRWL 453 Query: 592 DDRWAHERDLPPGQYVCISVTDSGVGMPPDVLARAFDPFFTTKPIGAGTGLGLSMVYGFA 651 DD A +R +PPGQYV +SV+D+G GM P+V+ARAFDPFFTTKP G GTGLGLSMVYGFA Sbjct: 454 DDIGALQRGVPPGQYVSLSVSDTGAGMSPEVVARAFDPFFTTKPTGQGTGLGLSMVYGFA 513 Query: 652 RQSGGQVRLYSEVGQGTTVSIYLPRHQHDGDEQDEADALDETAAGDGNGEVVLVVDDEAS 711 QSGG VR+YSE+GQG V IYLPRH +G D A + + +LVVDDE Sbjct: 514 GQSGGTVRIYSELGQGAMVCIYLPRHVGEGGVDDLALPEESHVPAAPGSKTILVVDDEPL 573 Query: 712 IRMLVAEILSDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGRQVADAGRAA 771 +RM+ E+L D GY VL+AEDGP ALR++++ Q IDLL+TDVGLP G+NGRQ+ADA RA Sbjct: 574 VRMVTVEVLRDLGYSVLEAEDGPSALRVVEACQEIDLLLTDVGLPNGMNGRQLADAIRAP 633 Query: 772 RPDLHVLFITGYAENAAFDNGHLERGMQLMTKPFKMEALARRVQSIL 818 RPDL VLF+TGYAENA ++GHLERGMQ++TKPF + LARRV+ ++ Sbjct: 634 RPDLPVLFVTGYAENAVLNHGHLERGMQVLTKPFAADVLARRVKELV 680 >gi|300311805|ref|YP_003775897.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1278 Score = 324 bits (830), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 178/415 (42%), Positives = 262/415 (63%), Gaps = 11/415 (2%) Query: 410 SEARLRAINESLEAEVSARTRELMATEEALRHSQKIEAIGQLTGGLAHDFNNLLGGISGS 469 +E LR +N++LE V E E ALR QK+EA+GQLTGG+AHDFNN+L I G+ Sbjct: 688 AEEALRELNDTLEQRVVEEILERSRAEAALRQMQKMEAVGQLTGGVAHDFNNVLQIIGGN 747 Query: 470 LDLMRV--RLVQGRGEELLRYVELAARSTQRAASLTQRLLAFARRQTLAPKPTRVNALIS 527 L L++ RL E + V +A + R A L+ +LLAFARRQ L P+ + ++ Sbjct: 748 LQLLQSDPRL----DERSRQRVRIAIGAVDRGAKLSSQLLAFARRQPLQPRSINLERVVQ 803 Query: 528 GMEELIRRTIGPAIVLEVVGAGGLWPTFVDGPQLESALLNLCINARDAMPGGGRLTIETA 587 M++L+RR +G I + A LW T +D Q+E+ ++N INARDAMP GGRLT++ Sbjct: 804 NMDDLLRRAVGENIDISTRVAHDLWNTMLDPNQVENLIINTAINARDAMPSGGRLTVQID 863 Query: 588 NKWLDDR-WAHERDLPPGQYVCISVTDSGVGMPPDVLARAFDPFFTTKPIGAGTGLGLSM 646 N L+D + + DL PG+YV + ++D+G GM P+V RAF+PFFTTK G GTGLGLSM Sbjct: 864 NVRLEDPVFLSQADLAPGEYVELQISDNGAGMSPEVRDRAFEPFFTTKLEGEGTGLGLSM 923 Query: 647 VYGFARQSGGQVRLYSEVGQGTTVSIYLPRHQHDGDEQDEADALDETAAGDGNGEVVLVV 706 YGF +QS G + ++SE G+GTT+ IY PR DE+ D + + G+ E +LVV Sbjct: 924 AYGFVKQSKGHISIHSEQGKGTTIRIYFPRCL---DEEVRIDEVRDLTVHGGD-ETILVV 979 Query: 707 DDEASIRMLVAEILSDAGYDVLQAEDGPGALRILQSKQRIDLLITDVGLPGGLNGRQVAD 766 +D+ ++++ V + LS GY VL+A++G AL ILQS IDL+ TDV +PG + ++A Sbjct: 980 EDDPNLQLTVIDTLSSLGYRVLKADNGERALEILQSGVAIDLVFTDVVMPGSVPVTELAQ 1039 Query: 767 AGRAARPDLHVLFITGYAENAAFDNGHLERGMQLMTKPFKMEALARRVQSILESR 821 R PD+ +LF +GY + G L+ G++L++KP+++ LA+R++ +L R Sbjct: 1040 QARLLVPDIEILFTSGYPRDTIVHEGRLDAGVELLSKPYRINQLAQRIRQMLSQR 1094 >gi|300311768|ref|YP_003775860.1| PAS/PAC sensor hybrid histidine kinase [Herbaspirillum seropedicae SmR1] Length = 552 Score = 280 bits (717), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 165/387 (42%), Positives = 235/387 (60%), Gaps = 7/387 (1%) Query: 436 EEALRHSQKIEAIGQLTGGLAHDFNNLLGGISGSLDLMRVRLVQGRGE--ELLRYVELAA 493 E+AL ++K+EA+GQLTGG+AHDFNNLL I+G LD++ + L + + + R + Sbjct: 164 EQALGQARKMEALGQLTGGIAHDFNNLLQVITGYLDMINLALRSDKPDLARVARSADSIR 223 Query: 494 RSTQRAASLTQRLLAFARRQTLAPKPTRVNALISGMEELIRRTIGPAIVLEVVGAGGLWP 553 +++ +AA LTQ+LLAFAR+Q L + +N+L G +L+ RT+G I ++ A GLW Sbjct: 224 KASGKAAMLTQQLLAFARKQRLEGRTINLNSLTEGFTDLVSRTLGGDITVQTELARGLWN 283 Query: 554 TFVDGPQLESALLNLCINARDAMPGGGRLTIETANKWL-DDRWAHERDLPPGQYVCISVT 612 +D Q+E ALLN+ INARDAM G GR+ I TAN+ L D A + L G YV I+VT Sbjct: 284 CRLDPTQMEVALLNVLINARDAMNGRGRVRIRTANEDLADPDRAVQLGLKEGLYVSIAVT 343 Query: 613 DSGVGMPPDVLARAFDPFFTTKPIGAGTGLGLSMVYGFARQSGGQVRLYSEVGQGTTVSI 672 D G G+ PD+L R DPFFTTK G GTGLGLSMVYGF +QSGG VR+ S GTTV+I Sbjct: 344 DDGPGIAPDILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRITSGAEGGTTVTI 403 Query: 673 YLPRHQHDGDEQDEADALDETAAGDGNGEVVLVVDDEASIRMLVAEILSDAGYDVLQAED 732 Y P Q D+ D + G E +LVVDD + L +L GY V Sbjct: 404 YFPATQ---DQVGGGFEYDNRSQSQGGQEHILVVDDRLEVAELAQTMLESLGYRVSMVNS 460 Query: 733 GPGALRILQSKQRIDLLITDVGLPGGLNGRQVADAGRAARPDLHVLFITGYAENAAFDNG 792 AL++++S + +DLL TD+ +PG +NG +A + P + VL TGYA + +G Sbjct: 461 PAEALQLIRSGRPVDLLFTDLIMPGSMNGVVLAREAKRMLPTIKVLLTTGYASESLERHG 520 Query: 793 HLERGMQLMTKPFKMEALARRVQSILE 819 + ++ KP++ + LAR+++ +L+ Sbjct: 521 A-DGEFPVLDKPYRHDELARKIRIVLD 546 >gi|300313027|ref|YP_003777119.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 454 Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 91/308 (29%), Positives = 142/308 (46%), Gaps = 62/308 (20%) Query: 431 ELMATEEALRHSQKIEAIGQLTGGLAHDFNNLLGGISGSLDLM---RVRLVQG------- 480 +L + L S+K+ +IGQL G+AH+ NN +G +S +L+ + L++G Sbjct: 170 QLKMAQAQLMQSEKLASIGQLAAGVAHEINNPIGFVSANLNTLGNYVATLLEGIQLHQCL 229 Query: 481 --------RGEELLR--------------YVELAARST---QRAASLTQRLLAFARRQTL 515 +E LR EL A S QR ++ Q L F+R + Sbjct: 230 QGGALPAAMAQEQLRSFEARADLAFLSEDVTELLAESNEGLQRVRNIVQSLKDFSR---I 286 Query: 516 APKPTRVNALISGMEELIRRTIGP-AIVLEVVGAGGLWPTF-VDGPQLESALLNLCINAR 573 ++ L G++ + + +V G P +L +NL +NA Sbjct: 287 GESNWQMTDLHRGLDSTLNIANNELKYKVSIVKQYGELPLVKCLASELNQVFMNLLVNAA 346 Query: 574 DAMPGGGRLTIETANKWLDDRWAHERDLPPGQYVCISVTDSGVGMPPDVLARAFDPFFTT 633 A+ G +TI TA G V +S++D+G G+ P+ L R F+PFFTT Sbjct: 347 QAISERGTVTICTARA--------------GDKVSVSISDTGHGIAPENLNRIFEPFFTT 392 Query: 634 KPIGAGTGLGLSMVYGFARQSGGQVRLYSEVGQGTTVSIYLPRHQHDGDEQDEADALDET 693 KP+G+GTGLGLS+ YG ++ GG +R+ S G GTT +I LP D A L ++ Sbjct: 393 KPVGSGTGLGLSLSYGIVKKHGGDIRVSSAPGCGTTFTIELPI--------DPASVLAQS 444 Query: 694 AAGDGNGE 701 +A + +GE Sbjct: 445 SATETSGE 452 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,783,073 Number of extensions: 129066 Number of successful extensions: 633 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 634 Number of HSP's successfully gapped: 17 Length of query: 825 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 732 Effective length of database: 1,179,515 Effective search space: 863404980 Effective search space used: 863404980 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)