BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0065.p
         (243 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309880|ref|YP_003773972.1| IclR family transcription regul...   475   e-135
gi|300309881|ref|YP_003773973.1| transcription regulator protein...   108   3e-25

>gi|300309880|ref|YP_003773972.1| IclR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  475 bits (1222), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 240/243 (98%), Positives = 240/243 (98%)

Query: 1   VEVAGRLLQALAMARQPMPLVALAAAAGLTSAQAHTYLVSLLRLGLIKRTPAEGHYEAGP 60
           VEVAGRLLQALA ARQPMPLVALAAAAGLTSAQAHTYLVSLLRLGLIKRTPAEGHYEAGP
Sbjct: 15  VEVAGRLLQALAAARQPMPLVALAAAAGLTSAQAHTYLVSLLRLGLIKRTPAEGHYEAGP 74

Query: 61  LALRLGVVRLSQQPAYRLAIAQAQHLSAATGCSVAVSLPTPEGPTIVHYAHAGKSLHLNL 120
           LALRLGV RLSQQPAYRLAIAQAQHLSAATGCSVAVSLPTPEGPTIVHYAHAGKSLHLNL
Sbjct: 75  LALRLGVARLSQQPAYRLAIAQAQHLSAATGCSVAVSLPTPEGPTIVHYAHAGKSLHLNL 134

Query: 121 HVGSVMALADTATGRTCCAFQPPQQWLPAWERQHPEASRARIRQFQAELEAIRQRGLERA 180
           HVGSVMALADTATGRTCCAFQPPQQWLPAWERQHPEASRARIRQFQAELEAIRQRGLERA
Sbjct: 135 HVGSVMALADTATGRTCCAFQPPQQWLPAWERQHPEASRARIRQFQAELEAIRQRGLERA 194

Query: 181 IDAPSPGVSSLCMPLLDQDQVLSLLLTVIGPSGSIDTGWRGAVARELRACIASISSQLNE 240
           IDAPSPGVSSLCMPLLDQDQVLSLLLTVIGPSGSIDTGWRGAVARELRACIASISSQLNE
Sbjct: 195 IDAPSPGVSSLCMPLLDQDQVLSLLLTVIGPSGSIDTGWRGAVARELRACIASISSQLNE 254

Query: 241 EAA 243
           E A
Sbjct: 255 ETA 257


>gi|300309881|ref|YP_003773973.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 282

 Score =  108 bits (271), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 139/250 (55%), Gaps = 12/250 (4%)

Query: 1   VEVAGRLLQALAMARQPMPLVALAAAAGLTSAQAHTYLVSLLRLGLIKRTPAEGHYEAGP 60
           ++  G+LL AL  A +P+ L  LA  AG+ +A+A  +LVSL ++GL+ R  A+G++  G 
Sbjct: 24  LDNTGQLLDALLAAGRPLALGDLARLAGMPAAKAFPHLVSLQKIGLLMRD-AQGNFLPGA 82

Query: 61  LALRLGVVRLSQQPAYRLAIAQAQHLSAATGCSVAVSLPTPEGPTIVHYAHAGKSLHLNL 120
           L L LG+  L +    R A A+   L+  TG SVA+++  P GPT+V    + +  H++L
Sbjct: 83  LGLELGLAALQRLSPLREAEAEVAALAQETGLSVALAVAGPLGPTVVRLEESSRPQHVSL 142

Query: 121 HVGSVMALADTATGRTCCAFQPPQQWLPAWERQHPEASRARIRQ-----------FQAEL 169
            +G+V+++  TA GR C A  P      A          A +             + A+L
Sbjct: 143 RIGTVLSMVHTAIGRVCAACAPADGLPGALALDGIRMEGAALESVCHADGSLHAAYAAQL 202

Query: 170 EAIRQRGLERAIDAPSPGVSSLCMPLLDQDQVLSLLLTVIGPSGSIDTGWRGAVARELRA 229
             IR +G+++A+  P PG+++L  P+ +    L+L++ V+G SGS DT  +GAVA+ LR+
Sbjct: 203 AKIRAQGMDQALGHPVPGINTLAAPVFNHAGQLALVMAVMGSSGSYDTALQGAVAQRLRS 262

Query: 230 CIASISSQLN 239
              ++S +L 
Sbjct: 263 AAQAVSWRLG 272


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 701,868
Number of extensions: 26850
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,226,865
Effective search space: 196298400
Effective search space used: 196298400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)