BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0058.p (447 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309874|ref|YP_003773966.1| nitrate/sulfonate/bicarbonate A... 912 0.0 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 175 6e-45 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 172 7e-44 gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate A... 162 5e-41 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 159 6e-40 >gi|300309874|ref|YP_003773966.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase/permease [Herbaspirillum seropedicae SmR1] Length = 447 Score = 912 bits (2356), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/447 (100%), Positives = 447/447 (100%) Query: 1 MTMTSPQQRPAVAELCAVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTIL 60 MTMTSPQQRPAVAELCAVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTIL Sbjct: 1 MTMTSPQQRPAVAELCAVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTIL 60 Query: 61 RCLTGLVEPSSGHTMAAGKPLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREE 120 RCLTGLVEPSSGHTMAAGKPLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREE Sbjct: 61 RCLTGLVEPSSGHTMAAGKPLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREE 120 Query: 121 RDAAVDRAIELIGLGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTA 180 RDAAVDRAIELIGLGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTA Sbjct: 121 RDAAVDRAIELIGLGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTA 180 Query: 181 ENLRQELISLWRAPDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPR 240 ENLRQELISLWRAPDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPR Sbjct: 181 ENLRQELISLWRAPDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPR 240 Query: 241 DTKSPEFQRLVNIIHEAITTLTLPDLPPEVHVPGEPISRGRKRMESIPLIPVGQILGLMS 300 DTKSPEFQRLVNIIHEAITTLTLPDLPPEVHVPGEPISRGRKRMESIPLIPVGQILGLMS Sbjct: 241 DTKSPEFQRLVNIIHEAITTLTLPDLPPEVHVPGEPISRGRKRMESIPLIPVGQILGLMS 300 Query: 301 LLHDEPELNNIYDISDEIGKEFGETIATVKAAEILELVDTPKQEVYLTDLGRRFVAADRL 360 LLHDEPELNNIYDISDEIGKEFGETIATVKAAEILELVDTPKQEVYLTDLGRRFVAADRL Sbjct: 301 LLHDEPELNNIYDISDEIGKEFGETIATVKAAEILELVDTPKQEVYLTDLGRRFVAADRL 360 Query: 361 GQRAIFAEQVYKLRIFHIILALLGEAEEIEAERVLKDIGSALPYDNPEKTFETMIAWGRY 420 GQRAIFAEQVYKLRIFHIILALLGEAEEIEAERVLKDIGSALPYDNPEKTFETMIAWGRY Sbjct: 361 GQRAIFAEQVYKLRIFHIILALLGEAEEIEAERVLKDIGSALPYDNPEKTFETMIAWGRY 420 Query: 421 AGLMDYNAKTGMVFVPKDEDDEDGASS 447 AGLMDYNAKTGMVFVPKDEDDEDGASS Sbjct: 421 AGLMDYNAKTGMVFVPKDEDDEDGASS 447 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 175 bits (444), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 143/249 (57%), Gaps = 9/249 (3%) Query: 2 TMTSPQQRPAVAELCAVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILR 61 T SP+ R + V K + T E+ L +I+L + +G+ + LLG SG GKST+L Sbjct: 4 TNASPRIR-----IQGVHKVFKT-DDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLN 57 Query: 62 CLTGLVEPSSGHTMAAGKPLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREER 121 + G PSSG + K + D +VFQ +AL+PW+TVEQNVA GL + E Sbjct: 58 AIAGFALPSSGQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEI 117 Query: 122 DAAVDRAIELIGLGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAE 181 V + ++ +GL ++ + +P++LSGGMRQRV IAR L ++ +DE F ALD LT Sbjct: 118 HQRVTQLLDKLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRR 177 Query: 182 NLRQELISLWRAPDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPRD 241 NL+ EL+ +W D +I VTH+IEEA+ +A RIVV+ RPG + + LP RD Sbjct: 178 NLQDELLRIW---DEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRD 234 Query: 242 TKSPEFQRL 250 PEF L Sbjct: 235 PADPEFNAL 243 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 172 bits (435), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 99/267 (37%), Positives = 153/267 (57%), Gaps = 10/267 (3%) Query: 7 QQRPAVAELCAVSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGL 66 Q+ PA+ EL VS + TA G L + ++V GE +A++G +G GKST L +TGL Sbjct: 17 QETPAI-ELRNVSCRFITADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGL 75 Query: 67 VEPSSGHTMAAGKPLYGVNRDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVD 126 ++P+ G G+P+ G++ VFQ A++PW +V +NVA G + + + A D Sbjct: 76 LKPTLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALAD 135 Query: 127 RAIELIGLGNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQE 186 I +GL + YP +LSGGMR+RV +A+ ++ P++L +DE FSALD+ T ++ E Sbjct: 136 EWIRRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDE 195 Query: 187 LISLWRAPDSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPRDTKSPE 246 L+ LW A SG S+ VTH++EEA+ +A ++ V+ RP L V LP PR + Sbjct: 196 LLRLWSA-HSG--SVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEVR 252 Query: 247 F-QRLVNIIHEAITTLTLPDLPPEVHV 272 + QR ++ I+ DL EVH+ Sbjct: 253 YEQRFID-----ISRRIWADLREEVHI 274 >gi|300309802|ref|YP_003773894.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 278 Score = 162 bits (410), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 133/227 (58%), Gaps = 10/227 (4%) Query: 18 VSKSYNTAGGHELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMAA 77 V K+Y G H LD + L + GE ++LLG SG GKST+L+ GL EPS GH Sbjct: 25 VEKTYRN-GTH---ALDEVRLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWW 80 Query: 78 GKPLYGVN---RDASVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVDRAIELIGL 134 G L V R ++VFQ L PW TVEQNV + L + R + DA V +++ +GL Sbjct: 81 GGNLATVGTPERTLAMVFQEATLMPWATVEQNVRLPLDLRHVPRAQADARVAASLKRVGL 140 Query: 135 GNYHSAYPRELSGGMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWRAP 194 ++H+ PRELSGGM+ R IARAL + P LL +DE F ALD T L +L +W Sbjct: 141 ESFHAVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSRQ 200 Query: 195 DSGLTSIFMVTHNIEEAVEMATRIVVVFPRPGRLGLVLDNPLPYPRD 241 D LT +F VTH+I EAV +++R++V+ RPGR+ + P PRD Sbjct: 201 D--LTVVF-VTHSIYEAVFLSSRVIVMAARPGRVIADVAIDAPGPRD 244 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 159 bits (401), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 80/201 (39%), Positives = 119/201 (59%), Gaps = 3/201 (1%) Query: 28 HELKVLDNIDLAVHEGELLALLGQSGSGKSTILRCLTGLVEPSSGHTMAAGKPLYGVNRD 87 + LD + L + G + LG SG GKST+L + G + S G G+P+ G + Sbjct: 17 QRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAE 76 Query: 88 ASVVFQTFALYPWLTVEQNVAVGLMSHNPTREERDAAVDRAIELIGLGNYHSAYPRELSG 147 VVFQ +L PW +V+ NVA+GL ++ + + L+GL ++ A P ELSG Sbjct: 77 RGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSG 136 Query: 148 GMRQRVGIARALVSKPKLLCLDEAFSALDVLTAENLRQELISLWRAPDSGLTSIFMVTHN 207 GMRQRVG+ARAL PK+L +DE F ALD +T E +++ L+S+W +F +TH+ Sbjct: 137 GMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGK---QVFFITHS 193 Query: 208 IEEAVEMATRIVVVFPRPGRL 228 IEEA+ + T ++V+ PRPGR+ Sbjct: 194 IEEALFLGTEVIVMSPRPGRI 214 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,384,218 Number of extensions: 58515 Number of successful extensions: 576 Number of sequences better than 1.0e-08: 124 Number of HSP's gapped: 380 Number of HSP's successfully gapped: 133 Length of query: 447 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 359 Effective length of database: 1,203,190 Effective search space: 431945210 Effective search space used: 431945210 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)