BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0057.p (550 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis tra... 1063 0.0 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 477 e-136 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 399 e-112 gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sen... 372 e-104 gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 359 e-100 >gi|300309873|ref|YP_003773965.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 547 Score = 1063 bits (2748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/550 (98%), Positives = 543/550 (98%), Gaps = 3/550 (0%) Query: 1 MGNLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNAL 60 MGNLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNAL Sbjct: 1 MGNLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNAL 60 Query: 61 SQRALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQ 120 SQRALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQ Sbjct: 61 SQRALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQ 120 Query: 121 IKNDEAATLPLMAKAVQLGLDNKTVEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEA 180 IKNDEAATLPLMAKAVQLGL+NK EAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEA Sbjct: 121 IKNDEAATLPLMAKAVQLGLENKAAEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEA 180 Query: 181 ATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQALARDIASGDL 240 ATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQA+ARDIASGDL Sbjct: 181 ATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQAVARDIASGDL 240 Query: 241 TATVRVREGDNSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 TATVRVREGD+SSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ Sbjct: 241 TATVRVREGDSSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 Query: 301 AASLEETAASMEELTTTVRQNTQHAGEALRLSGGATETAAAGSQAFDRVVQTMDRITASS 360 AASLEETAASMEELTTTVRQNTQHA EALRLSGGATETAAAGSQAFDRVVQTMDRITASS Sbjct: 301 AASLEETAASMEELTTTVRQNTQHASEALRLSGGATETAAAGSQAFDRVVQTMDRITASS 360 Query: 361 SKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIK 420 SKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIK Sbjct: 361 SKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIK 420 Query: 421 ELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMV 480 ELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMV Sbjct: 421 ELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMV 480 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDRSLAAPLEQAALARTPGM 540 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDRSLAAPLEQAAL RT Sbjct: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDRSLAAPLEQAALTRT--- 537 Query: 541 PGMPGMPALH 550 PGMPGMPALH Sbjct: 538 PGMPGMPALH 547 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 477 bits (1228), Expect = e-136, Method: Compositional matrix adjust. Identities = 280/532 (52%), Positives = 371/532 (69%), Gaps = 3/532 (0%) Query: 1 MGNLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNAL 60 M LKV TRLALGF ++V L+ IS +GL+GMA V L+DI NN + L + N++ Sbjct: 1 MNKLKVSTRLALGFASVVVLLVVISLVGLWGMATVKGNLSDIV-ANNQQGGLADVMNNSV 59 Query: 61 SQRALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQ 120 RALAIRNIAL E A + E + + QEK Y DA L KMF + TT RE +L Sbjct: 60 RIRALAIRNIALFQEPALIAREIERIKVQEKAYQDAREKLGKMFD-QPDTTRREHELFDL 118 Query: 121 IKNDEAATLPLMAKAVQLGLDNKTVEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEA 180 I + A T PLM +AV L +K+ E +L ++RP Q W+ +L EL FED+LN++A Sbjct: 119 IAQNAADTEPLMNQAVTLAQQDKSAELISLLTQKIRPVQAKWLDNLDELGRFEDELNNQA 178 Query: 181 ATSARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQALARDIASGDL 240 + +A TY + T ++L+ VAA+ LI RS+L QLG EP++AQ LA IA G+L Sbjct: 179 SAAADTTYRSILTTTWTLVAGSVLLAVAAAFLIVRSVLHQLGGEPAQAQELAAQIAQGNL 238 Query: 241 TATVRVREGDNSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQ 300 ++ + +GD SLMAS+E MR QL I GIK +AE+IS A+ QIA GN DLS+RTEEQ Sbjct: 239 AVSIPLAKGDQHSLMASLENMRAQLTRIVDGIKHSAESISTAASQIAVGNLDLSRRTEEQ 298 Query: 301 AASLEETAASMEELTTTVRQNTQHAGEALRLSGGATETAAAGSQAFDRVVQTMDRITASS 360 AASLEETA+SMEE+T+TV QNTQ+AG+ +L+ A+ A G + +RVV TM I+ S+ Sbjct: 299 AASLEETASSMEEITSTVEQNTQNAGQGHQLARSASLHAQKGGEVVERVVGTMKDISQSA 358 Query: 361 SKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIK 420 K+++II+ +EGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA +AKEI+ Sbjct: 359 YKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASSAKEIR 418 Query: 421 ELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMV 480 LI S+ HV AG +LV +AG M ++V S+Q+ ++M+ I A+ EQ SGI QIN A+ Sbjct: 419 GLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAASNEQSSGISQINIAIS 478 Query: 481 QMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIRQDR-SLAAPLEQ 531 QMD+VTQQNAALVEE+++AAQS++QQA+ L V+VF+I Q + ++A P EQ Sbjct: 479 QMDEVTQQNAALVEESASAAQSMAQQANSLRDAVAVFRIEQPQPAVAYPREQ 530 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 399 bits (1026), Expect = e-112, Method: Compositional matrix adjust. Identities = 245/549 (44%), Positives = 351/549 (63%), Gaps = 8/549 (1%) Query: 4 LKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQR 63 +K+ TRL LGF +++ L+ ++ G++ M +V T + +V N E LV + + +R Sbjct: 5 MKMGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFTHVVEVKNPESALVKEMLETVGER 64 Query: 64 ALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIKN 123 ++++RN+ L D+ +E+Q + Q Y A L ++F + T++ E+ L +I Sbjct: 65 SISLRNLMLPAAPEDVDIEAQYIEAQSLKYKMAAQKLQQLFAESSDTSDEEKAALPKIAA 124 Query: 124 DEAATLPLMAKAVQLGLDNKTVEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAATS 183 + L+ +AV+ G + E + L Q P Q++W L LA EDQLN EAA + Sbjct: 125 QASKAEKLINEAVEFGKRREAYELAQFLKEQYLPVQKSWQVELKALAALEDQLNKEAAEA 184 Query: 184 ARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQALARDIASGDLTAT 243 + Y+ RM+ + + ++ V A+ + R +LR+LG EP A +A IA GDL Sbjct: 185 SAVAYSRARMLMLLISAIGVVTAVLAAFWLTRHLLRKLGGEPDYAVQIAGQIAEGDLAVV 244 Query: 244 VRVREGDNSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQAAS 303 + R GD+ SLMA++ MR +L I ++ +ETI+ AS +IA+GN DLS RTE+QA + Sbjct: 245 IDTRAGDHDSLMAAMRVMRDKLAAIVAEVRKGSETITTASSEIARGNLDLSGRTEQQAGA 304 Query: 304 LEETAASMEELTTTVRQNTQHAGEALRLSGGATETAAAGSQAFDRVVQTMDRITASSSKM 363 LEETA+SME+L +TV+QN ++A +A L+ A++ A G +VVQTM I ASS K+ Sbjct: 305 LEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQTMQSINASSQKV 364 Query: 364 SDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIKELI 423 +DI+SVI+GIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK LI Sbjct: 365 ADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLI 424 Query: 424 GESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMVQMD 483 G+S+ V GS+LV AG M IV S++R ++M I A +EQ SGIEQ+N A++Q+D Sbjct: 425 GDSVGKVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQID 484 Query: 484 QVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKIR----QDRSLAAPLEQAALAR--- 536 +TQQNAALVE+A+AAA+SL +QA+GL ++VSVF++ + A AA+ R Sbjct: 485 DMTQQNAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAAQAHGHTAAPAHAPAAVERVID 544 Query: 537 -TPGMPGMP 544 TPG P +P Sbjct: 545 VTPGAPELP 553 >gi|300313925|ref|YP_003778017.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 522 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 248/516 (48%), Positives = 326/516 (63%) Query: 4 LKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQR 63 L V +RL GFG++L +L I + L +A VN L IT+VNN EI ++ +R A ++ Sbjct: 6 LTVSSRLKFGFGVVLFLILLIVGIALKKLAEVNRQLVSITEVNNVEIYHLSTMRAAAYEQ 65 Query: 64 ALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIKN 123 +LA R I L D+ + L RQ LY + AAL K+F TT+ E+Q L I+ Sbjct: 66 SLASRGIGLALTPEDLNQNANNLQRQIGLYTQSEAALAKLFADLQETTDTEKQALAAIQK 125 Query: 124 DEAATLPLMAKAVQLGLDNKTVEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAATS 183 A P ++ + L KT E ++ + Q K+L EL+ FED+LN+EA Sbjct: 126 MSAGLSPGLSNMIDLAKAQKTEELKPIMTGPLGKMQADRRKALAELSAFEDKLNNEAKDE 185 Query: 184 ARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQALARDIASGDLTAT 243 A A R + +A + ALL G+ A+ LI RS+LRQLG EP+ A LA IA GDL Sbjct: 186 ALAVSASARKLLIALGVIALLCGLMAAVLITRSVLRQLGGEPAYASRLAAQIAKGDLRTE 245 Query: 244 VRVREGDNSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLSQRTEEQAAS 303 V+ SLM S++ M L I ++S + I+ AS QIA GN DLS RTEEQA+S Sbjct: 246 VKADTRHPESLMMSMKTMNEGLRGIVREVRSGTDAIATASSQIASGNLDLSSRTEEQASS 305 Query: 304 LEETAASMEELTTTVRQNTQHAGEALRLSGGATETAAAGSQAFDRVVQTMDRITASSSKM 363 LEETA++ME+LT TV+QN AGEA RL+ A+ A+ Q VV TM I SS K+ Sbjct: 306 LEETASAMEQLTATVKQNADSAGEANRLAAEASAVASQSGQLVKEVVTTMAAIEDSSKKI 365 Query: 364 SDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAVAAKEIKELI 423 DIISVI+GI+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS+ AA+EIK LI Sbjct: 366 VDIISVIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSSAAAREIKALI 425 Query: 424 GESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQINTAMVQMD 483 +S+ V +GS LV+ AG M+ +V+SV R ++ I+ ++ EQ GI++IN A+ QMD Sbjct: 426 DDSVDKVASGSALVNRAGDTMSDVVSSVDRVVSVIGAISDSSAEQSKGIQEINHAISQMD 485 Query: 484 QVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI 519 QVTQQNAALVEEA+AA+Q+L QA L VV VF + Sbjct: 486 QVTQQNAALVEEAAAASQALQAQARRLSGVVEVFAV 521 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust. Identities = 225/531 (42%), Positives = 325/531 (61%), Gaps = 16/531 (3%) Query: 3 NLKVVTRLALGFGLILVFLLSISALGLYGMARVNDALTDITDVNNAEIKLVTALRNALSQ 62 +L V TRLAL F L+L +L ++ + + + +ND+LT ++D NN + + R ++ Sbjct: 10 SLSVATRLALSFALVLAMMLVLTVVSISRVNAINDSLTTVSDDNNVKQRYAINFRGSVHD 69 Query: 63 RALAIRNIALLDEQADMQVESQTLARQEKLYADAYAALDKMFTTEAATTERERQLLVQIK 122 RA+A+R++ L+ + +++ S +++ + Y + LD+MF E ER L IK Sbjct: 70 RAIALRDLTLVGD-TELKDVSALISKLDADYQRSAKLLDEMFAGMQVRPE-ERASLDSIK 127 Query: 123 NDEAATLPLMAKAVQLGLDNKTVEAGKMLITQVRPKQQAWIKSLTELAEFEDQLNDEAAT 182 EA +PL AK + A +++++Q +P W+ ++ + E+ ++ + Sbjct: 128 AVEARAMPLAAKVIAARSSGDVEGARQLMLSQAKPAFVDWLAAINHFIDMEESMSQAESA 187 Query: 183 SARNTYAWLRMVTVAAALAALLVGVAASALIARSILRQLGAEPSEAQALARDIASGDL-- 240 AR + + AAL+ G + LI RSI LGAEP E + LA + G+L Sbjct: 188 KARTVAREFKAFMLVLLAAALVAGTVLAMLITRSIRGALGAEPDEVKELALAVDRGELYH 247 Query: 241 ------TATVRVREGDNSSLMASIEQMRYQLNVIAHGIKSAAETISVASGQIAQGNFDLS 294 R R S+MA++ +M L ++ AA+ ++ S QIA GN DL+ Sbjct: 248 AAALPLAGKTRAR-----SIMATLSEMSGNLRHTVTRVRDAADGVATISSQIAAGNRDLA 302 Query: 295 QRTEEQAASLEETAASMEELTTTVRQNTQHAGEALRLSGGATETAAAGSQAFDRVVQTMD 354 RTE+QAASLEETA++ME+LT TV+QN HA +A +L+ A+E A G D VV TM Sbjct: 303 ARTEDQAASLEETASAMEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMA 362 Query: 355 RITASSSKMSDIISVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAV 414 I SS K+ DII VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA Sbjct: 363 AINVSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAA 422 Query: 415 AAKEIKELIGESMSHVGAGSQLVSDAGQQMAQIVASVQRFGEIMNNIATATQEQGSGIEQ 474 AAKE+K+LI +S+ +V G+ LV AGQ M QIVASVQ+ ++M I++A+ EQ GIE+ Sbjct: 423 AAKEVKQLIDDSVQNVENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGIEE 482 Query: 475 INTAMVQMDQVTQQNAALVEEASAAAQSLSQQASGLLKVVSVFKI-RQDRS 524 ++ A+ MDQVTQ NAALVE+ASAA +L +QA L + V VF++ R D+S Sbjct: 483 VHKAIALMDQVTQHNAALVEQASAAVATLQEQAVNLNQAVGVFQLERPDQS 533 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.124 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,068,478 Number of extensions: 32258 Number of successful extensions: 507 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 71 Length of query: 550 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 460 Effective length of database: 1,193,720 Effective search space: 549111200 Effective search space used: 549111200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)