BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0055.p (314 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309871|ref|YP_003773963.1| transcription regulator protein... 604 e-174 gi|300314079|ref|YP_003778171.1| LysR family transcription regul... 119 4e-28 gi|300310335|ref|YP_003774427.1| transcription regulator protein... 115 6e-27 gi|300313281|ref|YP_003777373.1| LysR family transcription regul... 102 4e-23 gi|300310448|ref|YP_003774540.1| transcription regulator protein... 100 1e-22 >gi|300309871|ref|YP_003773963.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 332 Score = 604 bits (1558), Expect = e-174, Method: Compositional matrix adjust. Identities = 313/314 (99%), Positives = 313/314 (99%) Query: 1 MTGTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVL 60 MTGTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVL Sbjct: 19 MTGTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVL 78 Query: 61 TPCAEALRERVRNVVHEARSVLRPSVPELDLSRLERDFSIRANDGFIEALGAQLIEAVTA 120 TPCAEALRERVRNVVHEARSVLRPSVPELDLSRLERDFSIRANDGFIEALGAQLIEAVTA Sbjct: 79 TPCAEALRERVRNVVHEARSVLRPSVPELDLSRLERDFSIRANDGFIEALGAQLIEAVTA 138 Query: 121 EAPLVRLRFVPKVERGPVPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRTGHPLA 180 EAPLVRLRFVPKVERGPVPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRTGHPLA Sbjct: 139 EAPLVRLRFVPKVERGPVPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRTGHPLA 198 Query: 181 ALRRVSAERYCAFDHVSASPRGVAAGPLHEALAARGLVRRVVAVVPSFPGALAVVRTSDL 240 ALRRVSAERYCAFDHVSASPRGVAAGPLHEALAARGLVRRVVAVVPSFPGALAVVRTSDL Sbjct: 199 ALRRVSAERYCAFDHVSASPRGVAAGPLHEALAARGLVRRVVAVVPSFPGALAVVRTSDL 258 Query: 241 VTMVPGSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAHRWLRDKVR 300 VTMVPGSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAHRWLRDKVR Sbjct: 259 VTMVPGSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAHRWLRDKVR 318 Query: 301 AVCAPLAQRRPGKP 314 AVCAPLA RRPGKP Sbjct: 319 AVCAPLAHRRPGKP 332 >gi|300314079|ref|YP_003778171.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 119 bits (297), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 145/311 (46%), Gaps = 21/311 (6%) Query: 5 DLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVLTPCA 64 DLNLL DA++ E ++ AA L ++ A+S L RLR+ D L++R + TP A Sbjct: 7 DLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPRA 66 Query: 65 EALRERVRNVVHEARSVLRPSVPELDLSRLERDFSIRANDGFIEALGAQLIEAVTAEAPL 124 E L VR + E +V+ P D+SR + F + D L+ + +AP Sbjct: 67 EELWPTVRRALSELEAVIAPE--SFDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAPR 124 Query: 125 VRLRFVPKVERGP-VPLREGSADLEIG----VASEMG-------PEVRLQTLFRDRFVGA 172 +++R +P R P L G DL +G V +++ ++ L+ ++V Sbjct: 125 IKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKSQISHARLYTGQYVCV 184 Query: 173 VRTGHPLAALRRVSAERYCAFDHVSASPRGVAAGPLHEALAARGLVRRVVAVVPSFPGAL 232 + HPLA + ++ + YC DH+ S G + + LA R+++ V F A Sbjct: 185 MHKSHPLAG-QPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFFTAG 243 Query: 233 AVVRTSDLVTMVPGSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAH 292 +V +S+L+T++P + G A + V ELP V ++WH R +PAH Sbjct: 244 RIVASSELITVLPRHLVAATGM------AEALVVKELPFQTPEEHVDMLWHERDARNPAH 297 Query: 293 RWLRDKVRAVC 303 +WLR + A Sbjct: 298 KWLRAHLSATT 308 >gi|300310335|ref|YP_003774427.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 309 Score = 115 bits (287), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 96/294 (32%), Positives = 141/294 (47%), Gaps = 11/294 (3%) Query: 5 DLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVLTPCA 64 DLNLL+ALDAL+ E S++ AA ++ LS SAMS L RLRE D LL++ GR+M TP A Sbjct: 7 DLNLLVALDALLTEMSISRAAEKIHLSQSAMSNALARLREYFDDELLIQVGRRMEPTPRA 66 Query: 65 EALRERVRNVVHEARSVLRPSVPELDLSRLERDFSIRANDGFIEALGAQLIEAVTAEAPL 124 E L++ V +V+ + ++P + R+F I +D + L +++ AE Sbjct: 67 EVLKDAVHDVLRRIDGSI-AALPAFVPAESTREFRISVSDFTLSVLIPRVLARAHAEGKH 125 Query: 125 VRLRFVPKVERGPVPLREGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRTGHPLAALRR 184 +R +P+V+ L DL + P+ + +FR+R V V LA Sbjct: 126 IRFALMPQVQDPTRSLDRAEVDLLVLPQEFCTPDHPAEEVFRERHVCVVWRDSALAQ-GE 184 Query: 185 VSAERYCAFDHVSASPRGVAAGPLHEALAAR--GLVRRVVAVVPSFPGALAVVRTSDLVT 242 ++ ERY A HV P G A + EA AR G RRV SF ALA+V+ +D + Sbjct: 185 LTLERYMASGHVVMVPPGANASSV-EAWMARKLGFARRVEVTSFSFASALALVQGTDRIA 243 Query: 243 MVPGSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAHRWLR 296 V + + + E PL L + + WH DP +WLR Sbjct: 244 TVHARLAQLLAPQWP------VVIKESPLSLGEMRQMMQWHRYRSNDPGIQWLR 291 >gi|300313281|ref|YP_003777373.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 323 Score = 102 bits (254), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 101/317 (31%), Positives = 138/317 (43%), Gaps = 22/317 (6%) Query: 1 MTGTDLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVL 60 M DLNLL A+ E SV+ AAR+L +S A+S L +LR A GDPL V+ GR M Sbjct: 1 MANFDLNLLPIALAVFEERSVSAAARKLDMSQPAVSVALNKLRSALGDPLFVKTGRGMQP 60 Query: 61 TPCAEALRERVRNVVHEARSVLRPSVPELDLSRLERDFSIRANDGFIEALGAQLIEAVTA 120 TP A +L R ++ + + S + + + F + +D L +L+E + Sbjct: 61 TPRAVSLIGPTREILQRVHAEVLSS-DQFTPATTTKRFVLALSDIGELMLLPRLLERIRD 119 Query: 121 EAPLVRLRFVPKVERGPVP----LREGSADLEIGVASEM-GPEVRLQTLFRDRFVGAVRT 175 EAP V V P L G DL IG ++ Q LF FV +R Sbjct: 120 EAPHAS---VVTVTMAPAELVAALESGEVDLAIGYFPDLRNRNFFQQRLFSQDFVCLLRA 176 Query: 176 GHPLAALRRVSAERYCAFDHVSASPRGVAAGPLHEALAARGLVRRVVAVVPSFPGALAVV 235 GHPL A +++S E Y A H+ G L R + RRVV F +V Sbjct: 177 GHPLPA-QKISLEHYQAAGHIVVKAEGRDQPMCERFLLRRKIRRRVVLSTAHFMAIPLLV 235 Query: 236 RTSDLVTMVP---GSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAH 292 TSDLV VP G F+ R AGI + E + + + WH + D + Sbjct: 236 ATSDLVATVPRAFGEFVVR---------FAGIRLVEPGFEMPMLDLKQHWHRKYHKDAGN 286 Query: 293 RWLRDKVRAVCAPLAQR 309 WLR A+ AQR Sbjct: 287 AWLRGLAAALFPAGAQR 303 >gi|300310448|ref|YP_003774540.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 100 bits (249), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/302 (30%), Positives = 133/302 (44%), Gaps = 24/302 (7%) Query: 5 DLNLLIALDALIAEASVAGAARRLGLSASAMSRTLTRLREATGDPLLVRAGRQMVLTPCA 64 DLNLL+ + E ++ ARRLGLS A+S L RLR + D L VR + M TP A Sbjct: 10 DLNLLVVFQEVFQERQISSVARRLGLSQPAVSNALARLRRSFEDELFVRTAQGMQPTPFA 69 Query: 65 EALRERVRNVVHE---ARSVLRPSVPELDLSRLERDFSIRAND-GFIEALGAQLIEAVTA 120 E L E V + + A ++ P+ R F+I D G + + A LIEA Sbjct: 70 EQLAEPVAAALQQVARALNLQEGFAPQTSARR----FTIAMTDVGEVYFMPA-LIEACAR 124 Query: 121 EAPLVRLRFVPKVERGPVPLR----EGSADLEIGVASEMGPEVRLQTLFRDRFVGAVRTG 176 AP V + V G + L+ G DL IG + + + LFR +V R G Sbjct: 125 CAPGVS---ISTVRAGAIDLKSEMESGRVDLAIGAFDNLSEALYQRRLFRQEYVSMFRIG 181 Query: 177 HPLAALRR--VSAERYCAFDHVSASPRGVAAGPLHEALAARGLVRRVVAVVPSFPGALAV 234 H L R VS + + A +H+ S + +++ L G++ V VP F + Sbjct: 182 HALDKPGRGEVSLKEFLAAEHLMVSSQESPYDRINQNLEKAGILPSVRFRVPHFTAVPYI 241 Query: 235 VRTSDLVTMVPGSFLTRAGAERKDGSAAGIHVFELPLPLEPIIVSLMWHPRVELDPAHRW 294 V ++ LV VP A A G+ + PL L + ++ WH R D + W Sbjct: 242 VSSTALVVTVPRKLAESAAA------PFGLRYIKPPLRLPSLQTNMFWHRRYNQDEGNVW 295 Query: 295 LR 296 LR Sbjct: 296 LR 297 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 914,116 Number of extensions: 37263 Number of successful extensions: 216 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 11 Length of query: 314 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 229 Effective length of database: 1,217,395 Effective search space: 278783455 Effective search space used: 278783455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)