BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0047.p (306 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309864|ref|YP_003773956.1| LysR family transcription regul... 617 e-178 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 167 8e-43 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 156 2e-39 gi|300310436|ref|YP_003774528.1| LysR family transcription regul... 152 3e-38 gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 151 6e-38 >gi|300309864|ref|YP_003773956.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 617 bits (1591), Expect = e-178, Method: Compositional matrix adjust. Identities = 306/306 (100%), Positives = 306/306 (100%) Query: 1 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 60 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT Sbjct: 1 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 60 Query: 61 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPE 120 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPE Sbjct: 61 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPE 120 Query: 121 IDVVLFELISVAQLEAFTANTIDIGFLRPVASRQPLELQLVDEEALVLAMPQGHALAAYD 180 IDVVLFELISVAQLEAFTANTIDIGFLRPVASRQPLELQLVDEEALVLAMPQGHALAAYD Sbjct: 121 IDVVLFELISVAQLEAFTANTIDIGFLRPVASRQPLELQLVDEEALVLAMPQGHALAAYD 180 Query: 181 RIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 240 RIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV Sbjct: 181 RIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 240 Query: 241 GILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPDQDNPAVTAFRLMAADYCAARAARL 300 GILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPDQDNPAVTAFRLMAADYCAARAARL Sbjct: 241 GILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPDQDNPAVTAFRLMAADYCAARAARL 300 Query: 301 RPATAR 306 RPATAR Sbjct: 301 RPATAR 306 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 167 bits (424), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 163/300 (54%), Gaps = 8/300 (2%) Query: 2 LDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTTE 61 ++L ++ F A+ L+F RAA LL++ QPPLSRQI LE LGV+L +R R + LT Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 62 GRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPEI 121 G+ F ++L EQ E R ++G+ +GF +A Y L+PE++ + RT +PEI Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 Query: 122 DVVLFELISVAQLEAFTANTIDIGFLRPVASRQPLELQLVDEEALVLAMPQGHALAAYDR 181 ++ E++++ Q+EA + ID+GF R S + + + EE LV P GH L A ++ Sbjct: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPLGHPLLARNK 180 Query: 182 IATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGVG 241 + QL Q FI++ + ++++ + + ++P + ++ T + LV AG+GV Sbjct: 181 VTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGVT 240 Query: 242 ILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPDQDN--------PAVTAFRLMAADYC 293 ++P S Q H V +RPL+++ + + M +R + + A T RL A +Y Sbjct: 241 LVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSLLLERLRTTAATIARLHAQEYT 300 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 156 bits (394), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/286 (32%), Positives = 144/286 (50%), Gaps = 3/286 (1%) Query: 1 MLDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTT 60 M++L + F A L+F RAA LL+++QPPL+RQI LE LG QLF+R R ++LT Sbjct: 1 MIELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTA 60 Query: 61 EGRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPE 120 G+ F D + + + E+A+ V +S GK+G ++VGF + Y ++P + + PE Sbjct: 61 AGKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPE 120 Query: 121 IDVVLFELISVAQLEAFTANTIDIGFL-RPVASRQPLELQLVDEEALVLAMPQGHALAAY 179 +D+ L E + ID+G + RP R+ L+ + E L+ +P+ H LA Sbjct: 121 VDMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRR-LDSHTIYAEPLLAVLPRDHRLAGR 179 Query: 180 DRIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLG 239 I+ +L FI Y+ I +P + TI++LV GLG Sbjct: 180 QSISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLG 239 Query: 240 VGILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPDQDNPAVTAF 285 V ++P S Q H D F+PL AP E+++ W D NP + F Sbjct: 240 VALVPTSMQAMHLDTTVFKPLIG-APMVEVAVIWNKDNTNPCIRTF 284 >gi|300310436|ref|YP_003774528.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 300 Score = 152 bits (384), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/287 (35%), Positives = 151/287 (52%), Gaps = 4/287 (1%) Query: 2 LDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTTE 61 L+L Q+R F A E++F RAAA L+MTQPPLS+ I LE LG LF+R R+V LT Sbjct: 7 LELRQLRYFAAVAEEMHFGRAAARLHMTQPPLSQTIAALEELLGTPLFQRTKRSVALTAA 66 Query: 62 GRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPEI 121 G L +A RLLQ + VRRA+ G +G + + F +A Y ++P LL + R P++ Sbjct: 67 GAALLPEAQRLLQQAAALPDLVRRAASGASGLLSLSFISSADYSILPPLLQRFRAHYPQV 126 Query: 122 DVVLFELISVAQLEAFTANTIDIGFLRPVASRQP---LELQLVDEEALVLAMPQGHALAA 178 + L E + QLE ID G L P + LE++ V E L+ A+P+G A+ Sbjct: 127 QIELREATTDVQLEDLLQGKIDAGLLLPPLPEKAAALLEVRPVLSEPLIAALPEG-AVRK 185 Query: 179 YDRIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGL 238 ++ L P I+ F++ I++ A V P Q Q TI+ LV AG+ Sbjct: 186 RGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVSAGM 245 Query: 239 GVGILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPDQDNPAVTAF 285 G+ ++P S V++R L+D AP + S+AWR D + + A Sbjct: 246 GMALVPQSVSNLKRPGVDYRRLSDPAPAIQTSLAWRRDSPSSVLRAL 292 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 151 bits (381), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 159/300 (53%), Gaps = 3/300 (1%) Query: 2 LDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTTE 61 +D+ Q++ FV A NF RA+ L++ QPPLSRQI LLE LGVQL R R +RLT Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 62 GRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPEI 121 GRVF A ++L +Q ++ ++ + + +GF + Y +P L+ + R PE+ Sbjct: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 Query: 122 DVVLFELISVAQLEAFTANTIDIGFLRPVASRQPLELQLVDEEALVLAMPQGHALAAYD- 180 D+ L EL S+ Q A + ID+GF R ++ + ++ EE LVLA+P ALA + Sbjct: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFALAGSNQ 180 Query: 181 RIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 240 R++ ++ GQ I++ F + I+++L D+ P + + T L LV A G+ Sbjct: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGI 240 Query: 241 GILPASAQRFHYDRVEFRPLADEAPRAEMSMAWRPDQDNPAVTAFRLMAADYCAARAARL 300 ++PASA R D + +R + D + + + R + + + A + + AD A A L Sbjct: 241 CLIPASA-RLRND-LHYRLIDDARATSPIILTHRINDNAWYIEAVKRLVADMYAEHPAWL 298 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.136 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 866,047 Number of extensions: 35866 Number of successful extensions: 294 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 56 Length of query: 306 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 221 Effective length of database: 1,217,395 Effective search space: 269044295 Effective search space used: 269044295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)