BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0045.p
         (480 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309862|ref|YP_003773954.1| hypothetical protein Hsero_0527...   946   0.0  

>gi|300309862|ref|YP_003773954.1| hypothetical protein Hsero_0527
           [Herbaspirillum seropedicae SmR1]
          Length = 528

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/480 (99%), Positives = 479/480 (99%)

Query: 1   VRPSAPALSLYSADGRLTAPAVWEQRQDDPLSARLARNLAASDTAGRWSGLGKALLDQAS 60
           VRPSAPALSLYSADGRLTAPAVWEQRQDDPLSARLARNLAASDTAGRWSGLGKALLDQAS
Sbjct: 49  VRPSAPALSLYSADGRLTAPAVWEQRQDDPLSARLARNLAASDTAGRWSGLGKALLDQAS 108

Query: 61  VSSSVYSQSVLLSATAAQGDDGVHAILRDQLHRFASQRIALTLTTNAGARIDVQLGANAE 120
           VSSSVYSQSVLLSATAAQGDDGVHAILRDQLHRFASQRIALTLTTNAGARIDVQLGANAE
Sbjct: 109 VSSSVYSQSVLLSATAAQGDDGVHAILRDQLHRFASQRIALTLTTNAGARIDVQLGANAE 168

Query: 121 GVAVDFKVSQGSLSDEDRAAVTALGEAFDQAIQGLAGRPPTLALDKLMQFDTHQLAALDF 180
           GVAVDFKVSQGSLSDEDRAAVTALGEAFDQAIQGLAGRPPTLALDKLMQFDTHQLAALDF
Sbjct: 169 GVAVDFKVSQGSLSDEDRAAVTALGEAFDQAIQGLAGRPPTLALDKLMQFDTHQLAALDF 228

Query: 181 TATLGDDLSLQLQIDGSQRSVTAHTAAGAMKVGLDATAAPVTGSAQQRQRAIASYLEQFD 240
           TATLGDDLSLQLQIDGSQRSVTAHTAAGAMKVGLDATAAPVTGSAQQRQRAIASYLEQFD
Sbjct: 229 TATLGDDLSLQLQIDGSQRSVTAHTAAGAMKVGLDATAAPVTGSAQQRQRAIASYLEQFD 288

Query: 241 AAARRGQGDAGLMALFKDAFAQLHASATAPVQDHTPALLAADATDRGMLSGLGDFSASIT 300
           AAARRGQGDAGLMALFKDAFAQLHASATAPVQDHTPALLAADATDRGMLSGLGDFSASIT
Sbjct: 289 AAARRGQGDAGLMALFKDAFAQLHASATAPVQDHTPALLAADATDRGMLSGLGDFSASIT 348

Query: 301 GNSAWPNPLRRDEVDGFDYQVSQRTSLSGAGQADRSIVQQAQSRLKASYHQSLQPDLPLQ 360
           GNSAWPNPLRRDEVDGFDYQVSQRTSLSGAGQADRSIVQQAQSRLKASYHQSLQPDLPLQ
Sbjct: 349 GNSAWPNPLRRDEVDGFDYQVSQRTSLSGAGQADRSIVQQAQSRLKASYHQSLQPDLPLQ 408

Query: 361 LDSTRQSQNYTYHQIDDRADSQLEIGYRHGFMTQARLRQSASQDSRVSKYVLGELVSQTH 420
           LDSTRQSQNYTYHQIDDRADSQLEIGYR GFMTQARLRQSASQDSRVSKYVLGELVSQTH
Sbjct: 409 LDSTRQSQNYTYHQIDDRADSQLEIGYRQGFMTQARLRQSASQDSRVSKYVLGELVSQTH 468

Query: 421 TPLQAQIVRDFAAQLQDGKEARAADGAYRRSRLLDGISELGLLQSDPQRVRAHGAQWLTE 480
           TPLQAQIVRDFAAQLQDGKEARAADGAYRRSRLLDGISELGLLQSDPQRVRAHGAQWLTE
Sbjct: 469 TPLQAQIVRDFAAQLQDGKEARAADGAYRRSRLLDGISELGLLQSDPQRVRAHGAQWLTE 528


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.128    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,349,419
Number of extensions: 51199
Number of successful extensions: 226
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 391
Effective length of database: 1,198,455
Effective search space: 468595905
Effective search space used: 468595905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)