BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0043.p
         (519 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309860|ref|YP_003773952.1| hypothetical protein Hsero_0525...  1048   0.0  

>gi|300309860|ref|YP_003773952.1| hypothetical protein Hsero_0525
           [Herbaspirillum seropedicae SmR1]
          Length = 545

 Score = 1048 bits (2710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/519 (100%), Positives = 519/519 (100%)

Query: 1   MEGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNAFVRKAEGAKEAVSQVIAERRDGEFALE 60
           MEGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNAFVRKAEGAKEAVSQVIAERRDGEFALE
Sbjct: 27  MEGFPPLTLAFLKQAMTDHGLTKLFFQDSVLNAFVRKAEGAKEAVSQVIAERRDGEFALE 86

Query: 61  VADDLMTASLTLVPPYGGRAKSVEVVNAIRAAGISYGILHETLRHALSAGQCNKLVIAQG 120
           VADDLMTASLTLVPPYGGRAKSVEVVNAIRAAGISYGILHETLRHALSAGQCNKLVIAQG
Sbjct: 87  VADDLMTASLTLVPPYGGRAKSVEVVNAIRAAGISYGILHETLRHALSAGQCNKLVIAQG 146

Query: 121 LMPTPAEPARFESLLEEKEEELADIDEDAVVSYADMGHILQVSVGDPLMRRIPPVPGQDG 180
           LMPTPAEPARFESLLEEKEEELADIDEDAVVSYADMGHILQVSVGDPLMRRIPPVPGQDG
Sbjct: 147 LMPTPAEPARFESLLEEKEEELADIDEDAVVSYADMGHILQVSVGDPLMRRIPPVPGQDG 206

Query: 181 IDIRGGKVPARPIADIGFAKECVGAEPSPDDPDLLIAMVPGQPSLIKNGVKVNPVIDVEN 240
           IDIRGGKVPARPIADIGFAKECVGAEPSPDDPDLLIAMVPGQPSLIKNGVKVNPVIDVEN
Sbjct: 207 IDIRGGKVPARPIADIGFAKECVGAEPSPDDPDLLIAMVPGQPSLIKNGVKVNPVIDVEN 266

Query: 241 VDLSTGNLTFEGTVRVSGDVMTGMKLHVGGDVVVNGTVEAAEIVAGGSVTVKGGVIGHSE 300
           VDLSTGNLTFEGTVRVSGDVMTGMKLHVGGDVVVNGTVEAAEIVAGGSVTVKGGVIGHSE
Sbjct: 267 VDLSTGNLTFEGTVRVSGDVMTGMKLHVGGDVVVNGTVEAAEIVAGGSVTVKGGVIGHSE 326

Query: 301 GVAAGAGTTAIASRISSQKSVQVMFAESAHIEAADDILVLGNARHCELLAGNEITVGKGN 360
           GVAAGAGTTAIASRISSQKSVQVMFAESAHIEAADDILVLGNARHCELLAGNEITVGKGN
Sbjct: 327 GVAAGAGTTAIASRISSQKSVQVMFAESAHIEAADDILVLGNARHCELLAGNEITVGKGN 386

Query: 361 PRTGHIIGGRVEATNIIRANVIGAPTAAHTRIQVGLDPYLEEKIAIKEQEYSRKVAELDR 420
           PRTGHIIGGRVEATNIIRANVIGAPTAAHTRIQVGLDPYLEEKIAIKEQEYSRKVAELDR
Sbjct: 387 PRTGHIIGGRVEATNIIRANVIGAPTAAHTRIQVGLDPYLEEKIAIKEQEYSRKVAELDR 446

Query: 421 TIKQQSYYKLNPDKATPELLHETSDKRKALAYEVKVLLEEVSQMKEGMVAAEDARIIVAK 480
           TIKQQSYYKLNPDKATPELLHETSDKRKALAYEVKVLLEEVSQMKEGMVAAEDARIIVAK
Sbjct: 447 TIKQQSYYKLNPDKATPELLHETSDKRKALAYEVKVLLEEVSQMKEGMVAAEDARIIVAK 506

Query: 481 AVHEGTELRIGHEVWPVQSDLGGGTAQLFEGDIRYNPKK 519
           AVHEGTELRIGHEVWPVQSDLGGGTAQLFEGDIRYNPKK
Sbjct: 507 AVHEGTELRIGHEVWPVQSDLGGGTAQLFEGDIRYNPKK 545


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,594,888
Number of extensions: 66111
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 430
Effective length of database: 1,198,455
Effective search space: 515335650
Effective search space used: 515335650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 133 (55.8 bits)