BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0031.p (554 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 1108 0.0 gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 602 e-173 gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 370 e-103 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 311 9e-86 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 301 1e-82 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 1108 bits (2867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/554 (99%), Positives = 553/554 (99%) Query: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLREMPVARRLGWTMGVLTLMF 180 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRE+PVARRLGWTMGVLTLMF Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 181 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG 240 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG 240 Query: 241 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT 300 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT Sbjct: 241 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT 300 Query: 301 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGNSVQRMGRTMEEID 360 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGG+SVQRMGRTMEEID Sbjct: 301 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEID 360 Query: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK 420 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK Sbjct: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK 420 Query: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ Sbjct: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 Query: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKISYAVSRAATVAPDTSVAL 540 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKISYAVSRAA VAPDTSVAL Sbjct: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKISYAVSRAANVAPDTSVAL 540 Query: 541 PPASQGPRKLALAR 554 PPASQGPRKLALAR Sbjct: 541 PPASQGPRKLALAR 554 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 602 bits (1551), Expect = e-173, Method: Compositional matrix adjust. Identities = 310/525 (59%), Positives = 391/525 (74%), Gaps = 9/525 (1%) Query: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 MR N+P+T ERLL DGK+IVSKTDL+GNI YVNPYFIEISGFEE EL+GAPQN++RHP+ Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MP EAFADMWAT+K G PW GLVKNR KNGD+YWV+ANVTP+RENG+ VGYMSVRT+P R Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLREMPVARRLGWTMGVLTLMF 180 + V AE Y GQA+G+ +HRG VVRTGL GWL L M + RL +MG++ L Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIM-LAI 179 Query: 181 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALML--LASWAMLHASIVAPLQRAIKAVHGLA 238 L VAG A + W+ A A L + W L +++ PL +A+ H + Sbjct: 180 QLAVVVAGMAALHQW------WISALAAAAALLSIVQWIALRNALIKPLHQALDITHAIT 233 Query: 239 GGDLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSG 298 GGDL I+TT ++G LL++L+Q+NVNL AIIGDVR NVE++T++T EIA+GN+DLS Sbjct: 234 GGDLSVRIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSR 293 Query: 299 RTEAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGNSVQRMGRTMEE 358 RTEAQA+ LEETASS+ E A+TVRQNAD A A+ A +ASAIA RGG++V G TM E Sbjct: 294 RTEAQAANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNE 353 Query: 359 IDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAA 418 I +SHKIVDII LID I+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAA Sbjct: 354 ISESSHKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAA 413 Query: 419 AKDIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQL 478 AK+IK LID S KV+ GN+ V + M ++ +V+ ++ M EI A+ +QS GI Q+ Sbjct: 414 AKEIKELIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQV 473 Query: 479 NQAVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKIS 523 ++A+ +D +TQQNA+LVE+AAAAA +L++Q V+L QA+SVFK + Sbjct: 474 HEAITQMDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFKFN 518 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust. Identities = 224/501 (44%), Positives = 315/501 (62%), Gaps = 10/501 (1%) Query: 21 VSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPEMPREAFADMWATLKEGLPWN 80 +S TD + Y N F+E+SGF E+LIG P NIVRHP+MPREAFADMWATL+ G W Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 81 GLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSREQVQAAEAAYRKFSAGQARG 140 +VKNR +G +YWV+ANVTP+R G G++SVRT+P+ +++AA A YR+F G+ARG Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 141 LRVHRGAVVRTGLTGWLQGLREMPVARRLGWTMGVLTLMFILGGAVAGNAVMSAGGSPFA 200 LR G VVR+GL GW + + +PV RL + L + GG +AG +P A Sbjct: 121 LRFCHGLVVRSGLLGWTRLEQVLPVRWRLRLALAAGGLTALAGGILAG--------APLA 172 Query: 201 VWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGGDLDSHIDTTARGDMGLLLQA 260 + L L W L + APL+ ++ +A G ++GLLL+A Sbjct: 173 PMAASVLPPLALACLW--LERRLAAPLELVLQQAKAVACGQPAQTQGLDRIDEIGLLLRA 230 Query: 261 LQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRTEAQASALEETASSVEEFAAT 320 + Q +NLRA+I DV V+ + ++ +IA+ N DL RT + L++TAS+ E+ A Sbjct: 231 VNQSGLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATA 290 Query: 321 VRQNADSAANADRQAQSASAIAQRGGNSVQRMGRTMEEIDAASHKIVDIIGLIDGISFQT 380 VR +ADSA A QA+ S A +G + V ++ +TM +I AS +I +I GLID I+FQT Sbjct: 291 VRHSADSAQAAHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQT 350 Query: 381 NILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAKDIKGLIDDSRAKVESGNQLV 440 NILALNAAVEAARAGE GRGFAVVAAEVRTLAQRSA+AA++IK LI S + ++G Q Sbjct: 351 NILALNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRA 410 Query: 441 RETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAA 500 + A A+ + ++M+ + I+ ++ EQS G+ Q++Q+ +D TQQNAA+VE +A Sbjct: 411 EQAAAAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSA 470 Query: 501 AAAENLRDQAVKLSQAVSVFK 521 AA ++ + L QAV+VF+ Sbjct: 471 AAVAAMQQRMQTLQQAVAVFE 491 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 311 bits (797), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 185/336 (55%), Positives = 247/336 (73%), Gaps = 1/336 (0%) Query: 188 GNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHA-SIVAPLQRAIKAVHGLAGGDLDSHI 246 G ++ G V L + A++ L A SIV PL A++ +A GDL + I Sbjct: 181 GAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRI 240 Query: 247 DTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRTEAQASA 306 + +R + G L+QAL+++N NL I+ VRR ES+T ++GEIA+GN+DLS RTE QA + Sbjct: 241 EPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGS 300 Query: 307 LEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGNSVQRMGRTMEEIDAASHKI 366 LEETAS++EE +TVRQNAD+A A++ A SAS IA +GG V R+ TM+EI+ +S KI Sbjct: 301 LEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKI 360 Query: 367 VDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAKDIKGLI 426 VDIIG+IDGI+FQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAAAAK+IK LI Sbjct: 361 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 Query: 427 DDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAID 486 DS KVE G+ LV + M ++ +V ++ +AEI+ AS EQS GIE++N+AV +D Sbjct: 421 ADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMD 480 Query: 487 ETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKI 522 E TQQNAALVEQAAAAA+++++QAV+L+Q++S+FK+ Sbjct: 481 EGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKL 516 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 301 bits (770), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 206/398 (51%), Positives = 273/398 (68%), Gaps = 13/398 (3%) Query: 164 PVARRLGWTMGVLTLMFILGGAVA-GNAVMSAGGSPFAVW-LGTAAGALMLLASWAMLHA 221 PV R+L +G L+ + G A++ +A G + A+ L T L + SW + A Sbjct: 155 PVYRKLQEQIGELSEVNSKGAALSDADADHIYGQANMAILALVTTCVVLAMALSWWI--A 212 Query: 222 SIVA-PLQRAIKAVHGLAGGDLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVE 280 +VA PL A+ +A GDL + I T R + G LL+AL+Q+N NL I+ +VR+ + Sbjct: 213 RLVARPLANAVDIARQVAAGDLTADIPTAHRDETGQLLEALRQMNGNLLNIVREVRQGTD 272 Query: 281 SMTISTGEIANGNMDLSGRTEAQASALEETASSVEEFAATVRQNADSAANADRQAQSASA 340 ++T ++ EIA GNMDLS RTE QA ALEETAS++EE +TVRQN+D+A A++ A +AS Sbjct: 273 TITTASAEIATGNMDLSSRTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVNASE 332 Query: 341 IAQRGGNSVQRMGRTMEEIDAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRG 400 +AQ GG V ++ TM I+ +S KIVDIIG+IDGI+FQTNILALNAAVEAARAGEQGRG Sbjct: 333 VAQAGGTVVGKVVATMSAINDSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 392 Query: 401 FAVVAAEVRTLAQRSAAAAKDIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVT 460 FAVVA+EVRTLAQRSAAAA +IK LIDDS AKV++G++LV E Q M E+ +V+ ++ Sbjct: 393 FAVVASEVRTLAQRSAAAAHEIKALIDDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDI 452 Query: 461 MAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVF 520 +AEIT A EQ+ GIEQ+N AV +DE TQQNAALVEQAAAAA+ L++QA +LS+ VSVF Sbjct: 453 VAEITAAGAEQTQGIEQINNAVVQMDENTQQNAALVEQAAAAAKALQEQAGRLSETVSVF 512 Query: 521 K-----ISYAVSRAATVAP---DTSVALPPASQGPRKL 550 + + VSRAA A D + A P +Q K+ Sbjct: 513 RLDAQHVPVVVSRAAATAQPERDITPARPALAQSRSKV 550 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.128 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,420,357 Number of extensions: 52074 Number of successful extensions: 545 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 335 Number of HSP's successfully gapped: 69 Length of query: 554 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 464 Effective length of database: 1,193,720 Effective search space: 553886080 Effective search space used: 553886080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)