BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0026.p (294 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309845|ref|YP_003773937.1| LysR family transcription regul... 590 e-170 gi|300310443|ref|YP_003774535.1| LysR family transcription regul... 318 3e-88 gi|300313122|ref|YP_003777214.1| transcription regulator protein... 148 4e-37 gi|300310906|ref|YP_003774998.1| LysR family transcription regul... 133 2e-32 gi|300309577|ref|YP_003773669.1| transcription regulator protein... 127 8e-31 >gi|300309845|ref|YP_003773937.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 294 Score = 590 bits (1521), Expect = e-170, Method: Compositional matrix adjust. Identities = 294/294 (100%), Positives = 294/294 (100%) Query: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT Sbjct: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 Query: 61 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA Sbjct: 61 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 Query: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDD 180 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDD Sbjct: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDD 180 Query: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDAFG 240 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDAFG Sbjct: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDAFG 240 Query: 241 AVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREESGAALA 294 AVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREESGAALA Sbjct: 241 AVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREESGAALA 294 >gi|300310443|ref|YP_003774535.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 295 Score = 318 bits (815), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 152/289 (52%), Positives = 208/289 (71%) Query: 1 MIPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELT 60 ++PPL +L AFEA+ARRKSF LAAAELHLT SA+SHQVARLE LG+RLFERS GV +T Sbjct: 3 VLPPLPNLQAFEAVARRKSFALAAAELHLTASAVSHQVARLESYLGIRLFERSAHGVRIT 62 Query: 61 PAGQSYLNRVAGALGAINSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 AG++YL R+ GA+ AI +A+ D+R GV N+L IHS+PS ASLWLM R+ F + +P+I Sbjct: 63 TAGEAYLARIQGAISAITAASMDVRQGVSNTLYIHSAPSIASLWLMARLNDFARSYPEIT 122 Query: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDTPDD 180 LSA+ S+FE+G+VD+DIR G+P+WP L +E + ER++P+ASP F+ +R+ P D Sbjct: 123 FNLSAAHSQSNFELGEVDIDIRYGIPNWPGLVVEPLFEERIVPLASPAFIREYRLRKPAD 182 Query: 181 LVLAPLIQSRGSLLQWPEWFARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDAFG 240 L+ LI+S S++QW +WF +A PE+ A+RFDRA MS++AA QGLGV ES Sbjct: 183 LLGVKLIRSNVSVVQWADWFGEFADVRAPEQFAVRFDRAQMSLDAATQGLGVALESATVA 242 Query: 241 AVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREES 289 A L +L+P+F A+++ H+AV PA + RP V FL+WLRE++ Sbjct: 243 ARHLEEKKLKPIFGLERAIKVKAHFAVYPAHHARRPAVAAFLEWLREQA 291 >gi|300313122|ref|YP_003777214.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 148 bits (374), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 100/288 (34%), Positives = 149/288 (51%), Gaps = 5/288 (1%) Query: 2 IPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTP 61 +PP+ +L AFEA AR SF +AA EL +TPSA+SH++ LE+ +G RLF R + + L+ Sbjct: 5 LPPVHALSAFEAAARHNSFAIAAEELCITPSALSHRIRLLEEFVGERLFYRDGRSIGLSE 64 Query: 62 AGQSYLNRVAGALGAINSATDDLRH-GVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 G+ YL+ V AL + R+ V+ +++ P+FA LMPRI FTQRHP+I Sbjct: 65 FGRRYLDVVRSALRTLTDFPMPHRNAAVQPKIKVMLPPTFARHLLMPRIADFTQRHPEIV 124 Query: 121 LGLSASPEISDFEIGQVDLDIRCGVPHWPDLEIEAVLSERVIPMASPDFLAR-HRIDTPD 179 + L S + D + + D++IR G ++P++ E + E +ASP +L + +P Sbjct: 125 VELYLSVPLYDLSLSESDVEIRFGAGNYPNIITEKLFEEPAFAVASPAYLKTLPPMKSPA 184 Query: 180 DLVLAPLIQSRGSLLQWPEWF-ARYAPDLRPERIALRFDRAMMSIEAAVQGLGVVFESDA 238 DL A L+ R +L W WF A D LR D + +EA G GV Sbjct: 185 DLKQATLL--RSALEPWQPWFEAAGLKDWVEPSAGLRVDDLGLLLEAVRHGYGVGLTRQH 242 Query: 239 FGAVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLR 286 F LA G + +F L +Y V + RPEV F+ W++ Sbjct: 243 FAEELLARGEIVELFDIRLRTPPHAYYVVYERAVRERPEVDTFISWMQ 290 >gi|300310906|ref|YP_003774998.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 147/294 (50%), Gaps = 9/294 (3%) Query: 4 PLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTPAG 63 PL ++ AF A AR +SF LAA EL++T AIS Q+ LE LG+ LFER T+ V LT G Sbjct: 7 PLNAIRAFLAAARHQSFTLAAHELNVTHGAISRQIKNLEGYLGMPLFERRTRQVLLTERG 66 Query: 64 QSYLNRVAGALGAI-NSATDDLRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIALG 122 + + + AL + N+A +R ++ I+ PSFA WL+P + F +R+P IA Sbjct: 67 RQFFEEASPALEILANAARRVMRDAPTRTVVINVRPSFAVRWLIPHLSDFVERYPGIAPQ 126 Query: 123 LSASPEISDFEIGQVDLDIRCGVPHWPD-LEIEAVLSERVIPMASPDFLARHRIDTPDDL 181 + S D+ +R G +WP+ L+++ + + ++ +ASP L ++ L Sbjct: 127 VVTSTATVGKAGSSFDIAVRRGETNWPETLKVQRFMEDELVLVASPALLQAMPLEDVSGL 186 Query: 182 VLAPLIQSRGSLLQWPEWFARYAPDLRPER--IALRFDRAMMSIEAAVQGLGVVFESDAF 239 ++ SR W +W R L+ R L FD ++A V GLGV + Sbjct: 187 ARHTVLLSRSRRNDWEDW--RKLAGLKRSRSQAMLHFDHVHFVLQAVVDGLGVALSPVSL 244 Query: 240 GAVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREESGAAL 293 L SGRL F D L L + +Y A+ S E LF +WL E GA+L Sbjct: 245 ADNDLRSGRLVCPFPD-LRLTLAPYYLGINAQAGS--EAQLFARWLAEYRGASL 295 >gi|300309577|ref|YP_003773669.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 301 Score = 127 bits (320), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 103/300 (34%), Positives = 139/300 (46%), Gaps = 13/300 (4%) Query: 2 IPPLTSLMAFEAIARRKSFNLAAAELHLTPSAISHQVARLEKLLGLRLFERSTKGVELTP 61 +PPL SL+AFEA R SF AAAELHLT SAIS Q+A+LE+ LG +LF R + + LT Sbjct: 6 LPPLPSLIAFEAAMRHGSFTRAAAELHLTQSAISRQIAQLERFLGKKLFLREPRALRLTV 65 Query: 62 AGQSYLNRVAGALGAINSATDD-LRHGVENSLQIHSSPSFASLWLMPRIGRFTQRHPDIA 120 +GQ Y V L AT+D ++ L + S A LWL PR+ RF RHPD Sbjct: 66 SGQRYAALVQRLLVDCAEATEDIMKRKGHQELTVACSQGVAVLWLTPRLARFRARHPDCH 125 Query: 121 LGLSASPEISDFEIGQVDLDI---RCGVPHWPDLEIEAVLSERVIPMASPDFLARHRIDT 177 L L + ++ D+ I R G P L + E V P+ SP +L R+ Sbjct: 126 LRLVVNDSLAQLSETDFDMGIYFLRDGPP--AGLAARRLYDEEVFPVCSPGYLD-GRLLA 182 Query: 178 PDDL---VLAPLIQSRGSLLQWPEWFARYA-PDLRPERIALRFDRAMMSIEAAVQGLGVV 233 P+DL L L + + W W A PD+R E L ++ ++ A++G GVV Sbjct: 183 PEDLRHQTLLTLEDGQRQWMSWQNWMAHNGMPDVRIEHQILSNQYPVL-LQLAMEGQGVV 241 Query: 234 FESDAFGAVALASGRLQPVFADGLALEITQHYAVCPARNKSRPEVMLFLQWLREESGAAL 293 + G L +L +YAV P F WL ES + L Sbjct: 242 LAWRHMIDACMEQGLLVRACQASASLG-GGYYAVWPRDRIEHAAARAFRSWLVAESESTL 300 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 985,695 Number of extensions: 43324 Number of successful extensions: 271 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 229 Number of HSP's successfully gapped: 54 Length of query: 294 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 210 Effective length of database: 1,222,130 Effective search space: 256647300 Effective search space used: 256647300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)