BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0025.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309844|ref|YP_003773936.1| glutamine amidotransferase [Her...   466   e-132
gi|300309390|ref|YP_003773482.1| glutamine amidotransferase [Her...   169   2e-43

>gi|300309844|ref|YP_003773936.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score =  466 bits (1198), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/238 (97%), Positives = 234/238 (98%)

Query: 1   MKEAIALRHVHFEDVGILDSLLASRGYRLRYIDATIEQADTAAAEQVDLLIVLGGPIGAY 60
           MKEAIALRHVHFEDVGILDSLLAS GYRLRYIDATIEQADTAAAEQ DLLIVLGGPIGAY
Sbjct: 1   MKEAIALRHVHFEDVGILDSLLASHGYRLRYIDATIEQADTAAAEQADLLIVLGGPIGAY 60

Query: 61  DEGLHPFLLRELDLIARRLQQQRPILGICLGAQLIARALGAVVAPMGLKEIGYAPLDLST 120
           DEGLHPFLLRELDLIARRLQQQRP+LGICLGAQLIARALGA VAPMGLKEIGYAPLDLST
Sbjct: 61  DEGLHPFLLRELDLIARRLQQQRPLLGICLGAQLIARALGAEVAPMGLKEIGYAPLDLST 120

Query: 121 EGSLSPLAALEGQPVLHWHGDQFAIPPGATCLASTPVCPHQAFSLGAHVLALQFHLEADP 180
           EG LSPLAALEGQPVLHWHGDQFAIPPGATCLASTPVCPHQAFSLGAHVLALQFHLEADP
Sbjct: 121 EGRLSPLAALEGQPVLHWHGDQFAIPPGATCLASTPVCPHQAFSLGAHVLALQFHLEADP 180

Query: 181 ARINQWLVGHACELGQAGIDPRSLREQAKRFGTDLRSAAHAVMSNWLDKLEASQSALS 238
           ARINQWLVGHACELGQAGIDPRSLREQAKRFGTDLRSAAHAVMSNWLDKLEASQSALS
Sbjct: 181 ARINQWLVGHACELGQAGIDPRSLREQAKRFGTDLRSAAHAVMSNWLDKLEASQSALS 238


>gi|300309390|ref|YP_003773482.1| glutamine amidotransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score =  169 bits (428), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/236 (44%), Positives = 134/236 (56%), Gaps = 7/236 (2%)

Query: 2   KEAIALRHVHFEDVGILDSLLASRGYRLRYIDATIEQADTAAAEQVDLLIVLGGPIGAYD 61
           K A+ALRHV  ED+G L  LLA  GY++R+ D  ++  D  +    DLLIVLGGPI  YD
Sbjct: 3   KTALALRHVVSEDLGQLAPLLARSGYQVRHFDVGVDSFDQVSPLDADLLIVLGGPIAVYD 62

Query: 62  EGLHPFLLRELDLIARRLQQQRPILGICLGAQLIARALGAVVAPMGL-KEIGYAPLD--- 117
              +P+L  E+  +  RL +  P LG+ LGAQL+A AL A V P    KEIG++ L    
Sbjct: 63  TEAYPWLRAEIAWLRARLLEDLPTLGLGLGAQLMAAALHARVYPGSCGKEIGWSRLQAGP 122

Query: 118 -LSTEGSLSPLAALEGQPVLHWHGDQFAIPPGATCLASTPVCPHQAFSLGAHVLALQFHL 176
            L     L  L   E + VLHWHGD F +P GA  LAS+ + PHQAF+ G H LALQFH 
Sbjct: 123 HLDEHAWLRQLVDQETR-VLHWHGDTFDLPRGARHLASSDMYPHQAFAWGRHCLALQFHP 181

Query: 177 EADPARINQWLVGHACELGQA-GIDPRSLREQAKRFGTDLRSAAHAVMSNWLDKLE 231
           E D   + QW++GHA E+     I    LR  A+++G     AA      WL  L+
Sbjct: 182 EVDVRTVEQWMLGHAHEIAHTRNISLARLRADAQQYGRRFEEAARRFWQGWLHSLD 237


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 829,601
Number of extensions: 38249
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)