BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0024.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309843|ref|YP_003773935.1| GntR family transcription regul... 472 e-134 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 63 2e-11 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 59 3e-10 gi|300312337|ref|YP_003776429.1| transcription regulator protein... 55 5e-09 gi|300311757|ref|YP_003775849.1| transcription regulator protein... 55 6e-09 >gi|300309843|ref|YP_003773935.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 431 Score = 472 bits (1215), Expect = e-134, Method: Compositional matrix adjust. Identities = 230/232 (99%), Positives = 230/232 (99%) Query: 1 MKIHGKTATEIFECVRTLVQTQRLHPGQLLPPVRELAEQLGVNRNTVAAAYRRLSTAGIA 60 MKIHGKTATEIFECVRTLVQTQRLHPGQLLPPVRELAEQLGVNRNTVAAAYRRLSTAGIA Sbjct: 1 MKIHGKTATEIFECVRTLVQTQRLHPGQLLPPVRELAEQLGVNRNTVAAAYRRLSTAGIA 60 Query: 61 STQRRLGTSIRSLPAPGEQEGSQPGTTLIDLAHGNPDPRWLPDLAALWRGRSYQPRLYGA 120 STQRRLGTSIRSLPAPGEQEGSQPGTTLIDLAHGNPDPRWLPDLAALWRGRSYQPRLYGA Sbjct: 61 STQRRLGTSIRSLPAPGEQEGSQPGTTLIDLAHGNPDPRWLPDLAALWRGRSYQPRLYGA 120 Query: 121 DTVNPALANYITQWCGPDCPAGFEVDLAHGAVDAIERLLFAYLRPGDKVAVENPCFLASI 180 DTVNPALANYI QWCG DCPAGFEVDLAHGAVDAIERLLFAYLRPGDKVAVENPCFLASI Sbjct: 121 DTVNPALANYIAQWCGLDCPAGFEVDLAHGAVDAIERLLFAYLRPGDKVAVENPCFLASI 180 Query: 181 NLIRTSGLESVGVSVDAEGMRVDELRSALAKGVRAVILTPRAHNPTGCALSA 232 NLIRTSGLESVGVSVDAEGMRVDELRSALAKGVRAVILTPRAHNPTGCALSA Sbjct: 181 NLIRTSGLESVGVSVDAEGMRVDELRSALAKGVRAVILTPRAHNPTGCALSA 232 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 62.8 bits (151), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 113/262 (43%), Gaps = 46/262 (17%) Query: 10 EIFECVRTLVQTQRLHPGQLLPPVRELAEQLGVNRNTVAAAYRRLSTAGIASTQRRLGTS 69 +I++ +R + L G LP R+LA +LG +RNTV AY +L G ++ GT Sbjct: 48 QIYQLIREAILAHTLPAGMQLPSSRDLALELGSSRNTVTYAYEQLLAEGYLESRPGAGTF 107 Query: 70 IRSL-----------PAP-----GEQEGSQPGTTLIDLAHGNPDPRW------LPDLAAL 107 + P P G+ E S G L A G + +W +PD+ + Sbjct: 108 VADTAPDQIPEAVERPEPLTDPSGKSELSARGAMLTRQA-GVGERQWGAFMPGVPDVTCV 166 Query: 108 ------------WRGRSYQPRLYGADT----VNPALANYITQWCGPDC-PAGFEVDLA-H 149 WR + YG + +A Y+ +C P+ + H Sbjct: 167 PYKIWGRLQNKHWRRSNADLLTYGPGAGYAGLREQIAEYLRVARSVNCTPSQVLITTGIH 226 Query: 150 GAVDAIERLLFAYLRPGDKVAVENPCFLASINLIRTSGLESVGVSVDAEGMRVDELRSAL 209 ++D + +LL + GD VE+PC+ + +++ + G++SV ++VD EGMR+ + L Sbjct: 227 QSLDIVVKLLGEH---GDSAWVEDPCYWGTRSVLNSLGIQSVPIAVDQEGMRMR--LANL 281 Query: 210 AKGVRAVILTPRAHNPTGCALS 231 + R + TP P G +S Sbjct: 282 RRPPRFICTTPSHQYPLGMVMS 303 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 31/262 (11%) Query: 1 MKIHGKTATEIFECVRT----LVQTQRLHPGQLLPPVRELAEQLGVNRNTVAAAYRRLST 56 + + KT+ + E V L++T L G+ LP VR+ A+ + +TV AY +L Sbjct: 11 LDLKRKTSARLVEQVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVA 70 Query: 57 AGIASTQRRLGTSIRSLPA-PGEQEGSQPGTTLID----LAHGNPDPR------------ 99 G+ +R G + + G+ P +ID L+ D R Sbjct: 71 RGMLQARRGAGFFVAARAGQSGQHAVFVPPEPVIDSAWLLSEMFADERVPIKAGCGWLPG 130 Query: 100 -WLPDLAA------LWRGRSYQPRLYGADTVNPALANYITQWCGP-DCPAGFE-VDLAHG 150 WL D + R Q YG L ITQ+ G G E V HG Sbjct: 131 KWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHG 190 Query: 151 AVDAIERLLFAYLRPGDKVAVENPCFLASINLIRTSGLESVGVSVDAEGMRVDELRS-AL 209 A A++ ++ +PGD V +++P + I ++R +GL +GV G+ D L + A Sbjct: 191 ATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVLETLAR 250 Query: 210 AKGVRAVILTPRAHNPTGCALS 231 + T NPTG + + Sbjct: 251 THHPKMFFTTSVLQNPTGTSYT 272 >gi|300312337|ref|YP_003776429.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 469 Score = 55.1 bits (131), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 100/241 (41%), Gaps = 43/241 (17%) Query: 26 PGQLLPPVRELAEQLGVNRNTVAAAYRRLSTAGIASTQRRLGTSI-RSLPAPGEQE---- 80 PG LP +RE+A + G +NT+ + L+ G+A +R G + + P P E E Sbjct: 27 PGSRLPSIREMAARHGCAKNTIVNVFDELTALGLAEPRRGAGFFVCVAPPRPKEDEEGNL 86 Query: 81 --------------GSQPGTTLIDLAHGNPDPRWLPD--------------LAALWRGRS 112 PG + L G P WL D + AL+ Sbjct: 87 SRAMDVVWLMREQLKHDPGQ--LRLGDGFPPVEWLHDVRLDKFHQKVVRTGIGALF---G 141 Query: 113 YQPRLYGADTVNPALANYITQWCGPDCPAGFEVDLAHGAVDAIERLLFAYLRPGDKVAVE 172 Y R +G + L + + Q G + G ++ L HGA A++ ++ ++RPGD+V V+ Sbjct: 142 YGSR-FGYLPLRQHLVHKLAQ-HGIEAGTG-QIVLTHGANQALDIVIRHFIRPGDRVLVD 198 Query: 173 NPCFLASINLIRTSGLESVGVSVDAEGMRVDELRSALAK-GVRAVILTPR-AHNPTGCAL 230 P + ++ SG +G+ +G V L L + G + T AHNPT Sbjct: 199 EPGYYMLYGKLKLSGARIIGIPRLPDGPDVAVLERELHRPGKPPLFFTQSLAHNPTASDT 258 Query: 231 S 231 S Sbjct: 259 S 259 >gi|300311757|ref|YP_003775849.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 55.1 bits (131), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 91/222 (40%), Gaps = 24/222 (10%) Query: 19 VQTQRLHPGQLLPPVRELAEQLGVNRNTVAAAYRRLSTAGIASTQRRLGTSIRSLPAPGE 78 + +RL PG LPP R+LAE L V+ TV AY + + GT + A + Sbjct: 5 ISDERLRPGDRLPPQRQLAEYLQVDLTTVTRAYGEARRRHLLEARGSAGTFV----AAPK 60 Query: 79 QEGSQPGTTLIDLAHGNPDPRWLPDLAALWRGRSYQPRLY-------------GADTVNP 125 + SQ LIDL+ P P DL L R Q ++ G+ Sbjct: 61 VDLSQ----LIDLSMNIPPPPAGIDLNDLLRQGMSQVLIHSDADLLMTYHLGGGSSADRA 116 Query: 126 ALANYITQWCGPDCPAGFEVDLAHGAVDAIERLLFAYLRPGDKVAVENPCFLASINLIRT 185 A A ++ GP A V GA A+ L+ + RPG+ + E + + + Sbjct: 117 AGAMWMQAMLGPVDEA--RVLACPGAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAH 174 Query: 186 SGLESVGVSVDAEGMRVDELRS-ALAKGVRAVILTPRAHNPT 226 G + V VD EGMR D L + A R V L P NPT Sbjct: 175 LGRRVMAVDVDDEGMRPDLLMTMARRHQARLVYLNPTLQNPT 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 793,775 Number of extensions: 34450 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 5 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)