BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0023.p
         (184 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309843|ref|YP_003773935.1| GntR family transcription regul...   346   6e-97

>gi|300309843|ref|YP_003773935.1| GntR family transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 431

 Score =  346 bits (888), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 177/184 (96%), Positives = 179/184 (97%)

Query: 1   VLVIVDDHFSLVSTARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 60
           VLVIVDDHF+L S ARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR
Sbjct: 248 VLVIVDDHFALTSMARYHSVIPAAAPRWALVRSFSKALGPDLRVAAVASDAATSQLLRTR 307

Query: 61  LSPGGSWVSHFLQDSIESALGRPDTAWLMQQARADYAARRERLERALHKQGIACATGGDG 120
           LSPGGSWVSHFLQDSIESAL RPDTA LMQQARADYAARRERLERALHK+GIACATGGDG
Sbjct: 308 LSPGGSWVSHFLQDSIESALSRPDTARLMQQARADYAARRERLERALHKEGIACATGGDG 367

Query: 121 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAAKLAADLR 180
           LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAA KLAADLR
Sbjct: 368 LNLWIALSGDDQAAALSMARLGWLLRHGEAFSVQQRVHGLRITLSALEADAAGKLAADLR 427

Query: 181 RSLS 184
           RSLS
Sbjct: 428 RSLS 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 514,785
Number of extensions: 17716
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,241,070
Effective search space: 129071280
Effective search space used: 129071280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)