BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0022.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309842|ref|YP_003773934.1| enzyme with a TIM-barrel fold p...   541   e-155
gi|300313097|ref|YP_003777189.1| enzyme with a TIM-barrel fold p...   155   4e-39

>gi|300309842|ref|YP_003773934.1| enzyme with a TIM-barrel fold
           protein [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  541 bits (1394), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 266/269 (98%), Positives = 268/269 (99%)

Query: 6   MSDPQFPEDESTAIRHDMHGRWPAAASLDEFRANLAAVHRRIAAACERAGRPASSVRLLP 65
           MSDPQFPEDESTAIRHDMHGRWPAAASLDEFRANLAAVHRRIAAACERAGRPASSVRLLP
Sbjct: 1   MSDPQFPEDESTAIRHDMHGRWPAAASLDEFRANLAAVHRRIAAACERAGRPASSVRLLP 60

Query: 66  VSKTKPESSIRLAYAAGCRLLGENKPQEACHKWEATQDLSGLQWSVIGHLQTNKAKLVAR 125
           VSKTKPESSIRLAYAAGC LLGENKPQEACHKWEATQDLSGLQWSVIGHLQTNKAKLVAR
Sbjct: 61  VSKTKPESSIRLAYAAGCCLLGENKPQEACHKWEATQDLSGLQWSVIGHLQTNKAKLVAR 120

Query: 126 FAAEFQALDSLRVAQALERRLQQEGRGLDVFVQVNTSGEASKYGLAPEEVAPFLRQLHAY 185
           FAAEFQALDSLRVAQALERRLQQEGRGLDVFVQVNTSGEASKYGLAPEEVAPFLRQLHAY
Sbjct: 121 FAAEFQALDSLRVAQALERRLQQEGRGLDVFVQVNTSGEASKYGLAPEEVAPFLRQLHAY 180

Query: 186 PALRLRGLMTLAVFSPEPARVRPCFSLLRNLRERLRQDVPAGAQLDELSMGMSGDYEIAI 245
           PALRLRGLMTLAVFSP+PARVRPCFSLLRNLRERLRQDVPAGAQLDELSMGMSGDYEIAI
Sbjct: 181 PALRLRGLMTLAVFSPDPARVRPCFSLLRNLRERLRQDVPAGAQLDELSMGMSGDYEIAI 240

Query: 246 EEGATVVRVGQALFGARALPDSHYWPSPE 274
           EEGATVVRVGQALFGARALPDSHYWPSP+
Sbjct: 241 EEGATVVRVGQALFGARALPDSHYWPSPD 269


>gi|300313097|ref|YP_003777189.1| enzyme with a TIM-barrel fold
           protein [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  155 bits (391), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/234 (42%), Positives = 135/234 (57%), Gaps = 11/234 (4%)

Query: 39  NLAAVHRRIAAACERAGRPASSVRLLPVSKTKPESSIRLAYAAGCRLLGENKPQEACHKW 98
           NL  V ++IAAA ERAGRPA +V+LL VSKT    ++  A  AG R  GEN  QEA  K 
Sbjct: 7   NLQHVQQQIAAAAERAGRPAGAVQLLAVSKTFGPQAVLEAVRAGQRAFGENYLQEALEKI 66

Query: 99  EATQDLSG---LQWSVIGHLQTNKAKLVARFAAEFQALDSLRVAQALERRLQQEGRGLDV 155
            A   L+    LQW  IG +Q+NK + +A       ++D L++AQ L  +       L+V
Sbjct: 67  AALPLLAPDVPLQWHFIGPIQSNKTRPIAEHFDWVHSVDRLKIAQRLSEQRPAALGALNV 126

Query: 156 FVQVNTSGEASKYGLAPEEVAPFLRQLHAYPALRLRGLMTLAVFSPEPARVRPCFSLLRN 215
            +QVN SGE SK GL P E+     Q+   P L+LRGLM +   S +  + R  F+ +R+
Sbjct: 127 CLQVNISGEDSKSGLDPAELPAVAAQVAQLPGLKLRGLMAIPAPSEDVTQQRAAFAAVRS 186

Query: 216 LRERLRQDVPAGAQLDELSMGMSGDYEIAIEEGATVVRVGQALFGARALPDSHY 269
           L  +L+     G  LD LSMGMS D + A+ EGA++VR+G A+FGAR     HY
Sbjct: 187 LLAQLQAQ---GLALDTLSMGMSADLDAAVAEGASIVRIGSAIFGAR-----HY 232


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 880,944
Number of extensions: 36739
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)