BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0004.p
         (211 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309821|ref|YP_003773913.1| transcription regulator protein...   435   e-123
gi|300310692|ref|YP_003774784.1| transcription regulator protein...    60   2e-10

>gi|300309821|ref|YP_003773913.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score =  435 bits (1118), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 211/211 (100%), Positives = 211/211 (100%)

Query: 1   MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60
           MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD
Sbjct: 1   MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60

Query: 61  AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120
           AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA
Sbjct: 61  AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120

Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180
           DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF
Sbjct: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180

Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQRR 211
           SPDSFDLVSEGERVLAASMHALKTAPSLQRR
Sbjct: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQRR 211


>gi|300310692|ref|YP_003774784.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score = 59.7 bits (143), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 6/183 (3%)

Query: 28  GVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFDAMCERVRLPMEAVLEENASPQVEDPLG 87
           GV  T+L  VA +A +TRGA+YWHF +K  L  A+ E +R P E   + +A    ++PLG
Sbjct: 23  GVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMRWPFELGEDLSAYHACDNPLG 82

Query: 88  QFLRSGVYV-LTMAATDERCRRVFDIIFNKCEFADAHDPILIRQRECHVDGMLRLEQILG 146
             LR  +++ +     D R RR  +I+       +  + + +R     +  +  L  ++ 
Sbjct: 83  -LLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELSLRLETMILRAVSELTAVIN 141

Query: 147 NAVARGQLPATLD-IRLACLMTHATFSGL---LTDWFFSPDSFDLVSEGERVLAASMHAL 202
            A  RG L   L  I +A  +  A+   +   + D   +P+ +  ++ G  ++ AS  AL
Sbjct: 142 IAYERGTLRRGLTPIDVARSIVAASLGVIAENMDDAQAAPEGYFYLTPGLVLVGASTLAL 201

Query: 203 KTA 205
           + A
Sbjct: 202 EDA 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 602,932
Number of extensions: 23024
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 211
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 130
Effective length of database: 1,236,335
Effective search space: 160723550
Effective search space used: 160723550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 128 (53.9 bits)