BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0002.p (1048 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 2108 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 1169 0.0 gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 1168 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 1155 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 701 0.0 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 2108 bits (5461), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1048/1048 (100%), Positives = 1048/1048 (100%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 Query: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM Sbjct: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 Query: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF Sbjct: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 Query: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY Sbjct: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 Query: 541 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD 600 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD Sbjct: 541 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD 600 Query: 601 PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVF 660 PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVF Sbjct: 601 PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDAIVF 660 Query: 661 PLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAP 720 PLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAP Sbjct: 661 PLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLEDAP 720 Query: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPED 780 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPED Sbjct: 721 QLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQPED 780 Query: 781 LTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME 840 LTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME Sbjct: 781 LTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMAEME 840 Query: 841 SFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 900 SFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV Sbjct: 841 SFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVMLVV 900 Query: 901 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLE 960 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLE Sbjct: 901 PLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEATLE 960 Query: 961 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF Sbjct: 961 AVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVPIFF 1020 Query: 1021 VVVRKIFKGSERQRKFDAEHSPKINSGE 1048 VVVRKIFKGSERQRKFDAEHSPKINSGE Sbjct: 1021 VVVRKIFKGSERQRKFDAEHSPKINSGE 1048 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 1169 bits (3023), Expect = 0.0, Method: Compositional matrix adjust. Identities = 591/1026 (57%), Positives = 758/1026 (73%), Gaps = 8/1026 (0%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 M +FFIDRP+FAWV+A+FI+L G +A++ LP+++YP++APPT+ + ATYPGAT QT++D Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 V SLIE+E++G L Y ES + +G QI++TF P T+P+LA VDVQN+LK +EARLP Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 V Q GV V + S+FLL + L+S DG+ D V L DYL+RN++ E++R+ GVG+ QLFG Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 E+AMRIW+DP KL LT D++ AI QNA +A G LG P+ QQIA + V GQL Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 SP QF I+L+A A+G+ V L DVARVE+G QSY + R +GKP+ VQLSP ANA+ Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 TA A+ +MEEL P G+ +++PY+T+ FVKISI++VV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 Query: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 N+RYT+IP IV P+ALLGT A + L G+S+NVLTMFGMVLAIGI+VDDAIVVVENVERIM Sbjct: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 Query: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 + EGL P +AT KAMG+I+GA+IGITLVL AVFIPMA GG+VG IYRQFS++M S++F Sbjct: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 Query: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 S +A +LTPALCAT+L+PV G HH+K+GFFG FNR FN + Y+ +G ++ + R Sbjct: 481 SAFLALSLTPALCATLLRPVPAG-HHDKRGFFGAFNRAFNRLTARYESALGRLIARGLRM 539 Query: 541 MIVYVLIVACVGLLYV---RLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYY 597 M+VY A GLL V LP++FLP EDQGY +T+ QLP A+T RT V Q E Y Sbjct: 540 MLVY---AALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERYL 596 Query: 598 LKDPAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKSQSADAIAGKAFGAFSQIKDA 657 + ++VLG+ FSG+G NAA+ FT LKDW +R S SA S + D Sbjct: 597 KGREDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKGSTSAAEAMAAQAAMESGV-DG 655 Query: 658 IVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLE 717 +V L PP I ELGN++GF RLQDRA G+ AL A Q+L +A++S+ L+GV +GL Sbjct: 656 MVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLP 715 Query: 718 DAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQ 777 +QL+IDR KA ALGV FS+I+ LS A+GS YVNDFPN GR Q+VI+QA A R+Q Sbjct: 716 AGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQ 775 Query: 778 PEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAMA 837 ED+ LY RN SG MVP + V A W P QL RY G+PA++I+G AAPG ++GEAMA Sbjct: 776 LEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVASGEAMA 835 Query: 838 EMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAVM 897 EME +LPPGF WTGQSL+E+ S QAP L ALS++ VFLVLAALYES SIPL+VM Sbjct: 836 EMERLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSVM 895 Query: 898 LVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIEA 957 LVVPLG++GA+ V LR MPNDV+FKVGMI V+GLSAKNAILI+EFA+ L+++G GL+EA Sbjct: 896 LVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVEA 955 Query: 958 TLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLVP 1017 ++A LR RPI+MTSLAF LGV+PL +ASGA + +QRAIGTGV GGM++ATVLAV VP Sbjct: 956 AIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFVP 1015 Query: 1018 IFFVVV 1023 +FFV+V Sbjct: 1016 VFFVLV 1021 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 1168 bits (3021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/1031 (56%), Positives = 755/1031 (73%), Gaps = 4/1031 (0%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 M +FFIDRP+FAWVLAI +MLAG +++ LP++QYP IAPP I +TA YPGA+A+TL+D+ Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 VT +IEQ+M G D L Y+ S S+++G V IT+TF TNPD A V VQN+L LP+ Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 V QQG+ VTKS +NFL + +S DG + L DY++ NV + I RV GVG LFG+ Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 + AMRIW+DPNKL LTP DV AIQAQNA V+ G LG LP+ QQI AT+ +L Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 + +QF NI+LR GA V+LRDVAR+E+G +SY + GR +GKP++ + ++L+ ANAL Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 T A+ K++ EL K+FPTG+K PYDT+ FV+ISIEEVV+TLIEA+VLVFLVM+LFLQ Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 Query: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 N R T+IPTI VPV LLGTF L +FGF+IN LTMF MVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 SEEGL P ATRK+MGQISGAL+G+ LVL AVF+PMAFF G+ G IYRQFS+++V++M Sbjct: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 Query: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 SVL+A LTPALCAT+LKP KGH GFFGWFNR+F+ + YQGI+ ML + RY Sbjct: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 Query: 541 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD 600 M Y +++A V +++LP FLP+EDQG + +QLP GA+ +RT V++Q+E+++L D Sbjct: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 Query: 601 --PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRD-KSQSADAIAGKAFGAFSQIKDA 657 AV AV G+SF+G+GQN F LK W +R S +A KA AF+ I+DA Sbjct: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 Query: 658 IVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLE 717 VF PP + ELGNATGF L+D A LGH AL+QARNQ+LG Q K L VRP GLE Sbjct: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 Query: 718 DAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQ 777 D P+ +L +D DKA ALGV S IN ++TA GSSYVNDF + GR ++V++Q DA+ R+ Sbjct: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 Query: 778 PEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPG-RSTGEAM 836 P D+ Y RNS+GTMVPFSAF TA W +G +L RYNG P+M+I G A PG S+GEAM Sbjct: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 Query: 837 AEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAV 896 A +E+ +AK+PPG G+EWTG SL+EK S + LY +S++ VFL LAALYES ++P +V Sbjct: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 Query: 897 MLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIE 956 +LVVPLG+ GALLG L NDVYF+VG++ +GL+ KNAILI+EFAKDL GK L+E Sbjct: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 Query: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 AT+EAV +R RPI+MTSLAFILGVLP+ + SGAG+ +Q A+GT V+GGM++ TVLAVF V Sbjct: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 Query: 1017 PIFFVVVRKIF 1027 P+FFV++ +F Sbjct: 1021 PLFFVIIMTLF 1031 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1155 bits (2987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/1046 (54%), Positives = 766/1046 (73%), Gaps = 6/1046 (0%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 M +FFIDRP+FAWV+AI IML G ++I L + QYP+IAPP + + ATY GA+A+TL+DS Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 VT +IEQ+M G D LQY+ + S + G +++TF+ TNPD+A + VQN+L++V ARLP Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 AV GV VTK+ ++ L+ + L+S D ++ + +GD++S + ++I RV GVG FGT Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 AMRIWIDP KL L P+D+T+A+QAQN V+ G +GALP+ QQI AT+ +L Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 T+P++F NII++++ +G+ V+L DVARVE+GG+SY + + +GKPSS + +QL+ ANAL Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 GTATAVHKKMEELAKYFPTGVKY--TIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLF 358 TA AV KK+ EL YFP +K I YDT+ FV++S+EEVVKTLIEAIVLV L+M+LF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 359 LQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVER 418 LQNIR T IP I VPV LLGTF L +FG+SIN LTMFGMVLAIG+LVDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 419 IMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASM 478 +MSEE LSP +ATRK+M +I+GAL+GI +VL AVFIPMAFFGG+ G IYRQFS+++V++M Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 479 VFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAG 538 SV++A TLTPALCAT+LKP GH + + FF WFNR F+ +A+ YQG + G+L + Sbjct: 481 ALSVMVALTLTPALCATLLKPHAGGHVQQGR-FFTWFNRSFDRSATRYQGGVAGLLKRGK 539 Query: 539 RYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYL 598 R +++Y LI + +L++RLP SFLP EDQG ++ +QLP GA+ +T VVK ++EY++ Sbjct: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFM 599 Query: 599 KDP-AVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRDKS-QSADAIAGKAFGAFSQIKD 656 P +VE +A++G GN QN A F LKDW QR + QSA + +A S+I+ Sbjct: 600 NKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIRG 659 Query: 657 AIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGL 716 A VF +NPP + LG ++GF L+D G+GH AL+QAR+Q L +A + +LA VR GL Sbjct: 660 ARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTGL 719 Query: 717 EDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRL 776 +D PQL++ ID KA+AL + S IN+ L+TA+G +YVNDF + GR ++V VQ D+ R+ Sbjct: 720 DDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFRM 779 Query: 777 QPEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPGRSTGEAM 836 Q +DL Y RN++ MVPF+AF++++W GP L RYNG + +I G A G S+G AM Sbjct: 780 QADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAM 839 Query: 837 AEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAV 896 AE+E VA+LP G GFEWTG S +E+ SGNQAP LYA+S++ VFL LAALYES S+P AV Sbjct: 840 AEVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAV 899 Query: 897 MLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIE 956 +L VPLGI+G +L + M NDVYF+VG++ VGLSAKNAILI+EFAK L GK L E Sbjct: 900 ILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSLWE 959 Query: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 ATLEAV LR RPI+MTSLAF+ GVLPLA+ASGAGSAS+RAIGTGV+GGM++AT+L +F V Sbjct: 960 ATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFV 1019 Query: 1017 PIFFVVVRKIF-KGSERQRKFDAEHS 1041 P+F+ ++ + + R+ + D +H+ Sbjct: 1020 PLFYYLIGAWLDRRAARKPRQDDDHA 1045 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/1061 (41%), Positives = 650/1061 (61%), Gaps = 35/1061 (3%) Query: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 + KFFIDRP+FA VL++ ++L G LA+ LP+S+YP + PP++VV A YPGA + + ++ Sbjct: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 Query: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 V S +E+++NG + + Y++SQ+ ++G + IT+ F +PD A VQNR+ + RLP Sbjct: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 Query: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 V + GV KS + + L+S D + D L +Y NV + + R+ GVG+ LFG+ Sbjct: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 Query: 181 -ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQ 239 AMR+W+DPNK+ LT DV AI+ QN VA G +GA PS + +V G+ Sbjct: 183 GNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 Query: 240 LTSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANA 299 L + +F +IIL+A+ +GAT RL DVARVE+ Y LD KP+ I + +P ANA Sbjct: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 Query: 300 LGTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFL 359 L +T V M+EL+ FP+ V Y+I YD ++FV+ SIE VV TL+EAI LV +V+ +FL Sbjct: 303 LDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFL 362 Query: 360 QNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERI 419 Q R +IIP + VPV+++GTF+ +L FG++IN L++FGMVLAIGI+VDDAIVVVENVER Sbjct: 363 QTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERN 422 Query: 420 MSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMV 479 + GLSP DAT +AM ++SG +I I L L+AVF+P+AF G G Y+QF++++ S V Sbjct: 423 IG-AGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481 Query: 480 FSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASG-------------- 525 S AF + L + + KGH + W R+ + G Sbjct: 482 IS---AFN-SLTLSPALAALLLKGHGDKPD----WLTRQMDRFLGGFFIRFNRFFNRASD 533 Query: 526 -YQGIIGGMLNKAGRYMIVYVLIVAC-VGLLYVRLPASFLPNEDQGYIITNVQLPPGAST 583 Y + G++ + G M VYVL++A +G+ Y+ +P F+P +D+ Y++ QLP GAS Sbjct: 534 NYGHGVTGVIKRKGATMGVYVLLLAATLGISYI-VPGGFVPGQDKQYLVAFAQLPNGASI 592 Query: 584 SRTTAVVKQIEEYYLKDPAVEHAIAVLGYSFSG--NGQNAALVFTPLKDWSQR-DKSQSA 640 R+ V++++ + LK+P V AIA G S +G N +A +VF LK + +R K S Sbjct: 593 DRSEEVMRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSAGIVFVGLKPFEERKSKDLSG 652 Query: 641 DAIAGKAFGAFSQIKDAIVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILG 700 +AIA F IK+A PPP+ LG GF +++DR LG+ L +A + Sbjct: 653 NAIAASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAFMK 712 Query: 701 MASQSKVLAGVRPEGLEDAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNL 760 A++ L + + PQL +++DR KA LG+P + + + + LGS YVNDF Sbjct: 713 AAAKEPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFNRF 772 Query: 761 GRQQRVIVQADAKRRLQPEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAM 820 GR +V QADA R + ED+ L RN +G MVP S+ V K GP ++RYNGY A Sbjct: 773 GRVYQVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYTAA 832 Query: 821 KIAGGAAPGRSTGE-AMAEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAV 879 I GG APG S+ + A A LP G FEWT + ++ +GN ++ +S++ V Sbjct: 833 DINGGPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQKILAGNAGVWVFPISVLLV 892 Query: 880 FLVLAALYESTSIPLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAIL 939 FLVLAALYES ++PLAV+L+VP+ IL AL GV L N+++ ++G++ +VGLSAKNAIL Sbjct: 893 FLVLAALYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAIL 952 Query: 940 IIEFAKDLQAQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGT 999 I+EFA++L+ QG+ ++A +EA LR RPI+MTS+AFI+GV+PL +SGAGS + A+G Sbjct: 953 IVEFARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGI 1012 Query: 1000 GVMGGMITATVLAVFLVPIFFVVVRKIFKGSERQRKFDAEH 1040 V GM+ T+ +FL P+F+V++R I +R+ A H Sbjct: 1013 AVFFGMLGVTLFGLFLTPVFYVLLRTI----DRRALHSASH 1049 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,222,730 Number of extensions: 139335 Number of successful extensions: 684 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 596 Number of HSP's successfully gapped: 17 Length of query: 1048 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 953 Effective length of database: 1,170,045 Effective search space: 1115052885 Effective search space used: 1115052885 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)