BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0001.p
         (127 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312765|ref|YP_003776857.1| SOS mutagenesis protein [Herbas...   257   2e-70
gi|300311389|ref|YP_003775481.1| SOS-response transcription repr...    58   2e-10

>gi|300312765|ref|YP_003776857.1| SOS mutagenesis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 141

 Score =  257 bits (657), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 126/127 (99%), Positives = 126/127 (99%)

Query: 1   LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVV 60
           LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVV
Sbjct: 15  LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACTFLFDVAGWSMSGAHIVEGDKVV 74

Query: 61  VDRSVSPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVV 120
           VDRSVSPQPGHIVVAIVN EFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVV
Sbjct: 75  VDRSVSPQPGHIVVAIVNGEFTIKRLRLVNGAYELHPENPDFRPIRFGDGEVLEVFGVVV 134

Query: 121 GVARKML 127
           GVARKML
Sbjct: 135 GVARKML 141


>gi|300311389|ref|YP_003775481.1| SOS-response transcription
           repressor [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 57.8 bits (138), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 10/129 (7%)

Query: 1   LALHITHKLHAGFPSPAADYTADPLDLNQYLVDRVACT----FLFDVAGWSMSGAHIVEG 56
           L+L +  ++ AG P  A ++         Y VD    +    +L  V G SM  A I++G
Sbjct: 90  LSLPLIGRVAAGSPILAQEHVE-----KTYQVDPAMFSGKPDYLLKVRGMSMRDAGILDG 144

Query: 57  DKVVVDRSVSPQPGHIVVAIVNAEFTIKRLRLVNGAYELHPENPDFRPIRFG-DGEVLEV 115
           D + V ++   + G IVVA +  E T+KR +       L PENPDF+PI    + E   +
Sbjct: 145 DLLAVRKTDQARNGQIVVARLADEVTVKRYQKTGSVITLFPENPDFKPIIVKPNEEQFAL 204

Query: 116 FGVVVGVAR 124
            G+ VG+ R
Sbjct: 205 EGLAVGLMR 213


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.142    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 381,640
Number of extensions: 13803
Number of successful extensions: 33
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 52
Effective length of database: 1,264,745
Effective search space: 65766740
Effective search space used: 65766740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)