BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0059.p
         (378 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylas...   766   0.0  
gi|300310949|ref|YP_003775041.1| endonuclease III protein [Herba...    59   6e-10

>gi|300313203|ref|YP_003777295.1| A/G-specific adenine glycosylase
           [Herbaspirillum seropedicae SmR1]
          Length = 378

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/378 (99%), Positives = 377/378 (99%)

Query: 1   MKGVVESRRKAPASAEAGQYEDPSFSAAVIAWQKQHGRHKLPWQNTRDAYRVWLSEIMLQ 60
           MKGVVESRRKAPASAEAGQYEDPSFSAAVIAWQKQHGRHKLPWQNTRDAYRVWLSEIMLQ
Sbjct: 1   MKGVVESRRKAPASAEAGQYEDPSFSAAVIAWQKQHGRHKLPWQNTRDAYRVWLSEIMLQ 60

Query: 61  QTQVAAVIPYYQRFLERCPDVFALAAAPSEDVMALWSGLGYYTRARNLHKCAQRVVEQYG 120
           QTQVAAVIPYYQRFLERCPDVFALAAAPSEDVMALWSGLGYYTRARNLHKCAQRVVEQYG
Sbjct: 61  QTQVAAVIPYYQRFLERCPDVFALAAAPSEDVMALWSGLGYYTRARNLHKCAQRVVEQYG 120

Query: 121 GRFPDDPDLLADLPGIGRSTAAAIAAFSYGRRAAILDGNVKRVFARVFGIDGYPGAKPIE 180
           GRFPDDPDLLADLPGIGRSTAAAIAAFSYGRRAAILDGNVKRVFARVFGIDGYPGAKPIE
Sbjct: 121 GRFPDDPDLLADLPGIGRSTAAAIAAFSYGRRAAILDGNVKRVFARVFGIDGYPGAKPIE 180

Query: 181 DKLWLRAVALLPDQDIESYTQGLMDLGATLCVRGKPACERCPLAGRCVALAQDRVAELPV 240
           DKLWLRAVALLPDQDIESYTQGLMDLGATLCVRGKPACERCPLAGRCVALAQDRVAELPV
Sbjct: 181 DKLWLRAVALLPDQDIESYTQGLMDLGATLCVRGKPACERCPLAGRCVALAQDRVAELPV 240

Query: 241 SKPKKAVPERETVMLVITHGEDVLLEQRPDSGIWGGLLSLPEIAVGGAAQFDTAVRTLVA 300
           SKPKKAVPERETVMLVITHGEDVLLEQRPDSGIWGGLLSLPEIAVGGAAQFDTAVRTLVA
Sbjct: 241 SKPKKAVPERETVMLVITHGEDVLLEQRPDSGIWGGLLSLPEIAVGGAAQFDTAVRTLVA 300

Query: 301 PYGELQGCRKLQPFSHVFTHFKLHVAPFQVAMQSRSQRIAEGGLVWYPVARLGEAPLPAP 360
           PYGELQGCRKLQPFSHVFTHFKLHVAPFQVAMQSRSQRIAEG LVWYPVARLGEAPLPAP
Sbjct: 301 PYGELQGCRKLQPFSHVFTHFKLHVAPFQVAMQSRSQRIAEGALVWYPVARLGEAPLPAP 360

Query: 361 VKKLLLGALRSDDLLATV 378
           VKKLLLGALRSDDLLATV
Sbjct: 361 VKKLLLGALRSDDLLATV 378


>gi|300310949|ref|YP_003775041.1| endonuclease III protein
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 90  EDVMALWSGLGYY-TRARNLHKCAQRVVEQYGGRFPDDPDLLADLPGIGRSTAAAIAAFS 148
           + +M     +G Y T+A+N+ +  + ++E++GG+ P+  + L  LPG+GR TA  +   +
Sbjct: 70  DQLMPYIQTIGLYRTKAKNVIETCRILIEEHGGQVPESREALEALPGVGRKTANVVLNTA 129

Query: 149 YGRRAAILDGNVKRVFARVFGIDGYPGAKPIEDKLWLRAVALLPDQDIESYTQGLMDLGA 208
           +G     +D ++ RV  R  G+        +E KL ++ VA    QD   +   L+  G 
Sbjct: 130 FGHPTIAVDTHIFRVSNRT-GLAPGKDVDEVERKL-IKFVAPEFRQDAHHW---LILHGR 184

Query: 209 TLCVRGKPACERCPLAGRC 227
             C+  KP C  C +A  C
Sbjct: 185 YTCIARKPQCWNCIIADLC 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,167,990
Number of extensions: 48542
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 2
Length of query: 378
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,207,925
Effective search space: 351506175
Effective search space used: 351506175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)