BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0058.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313204|ref|YP_003777296.1| formamidopyrimidine-DNA glycosy...   505   e-144

>gi|300313204|ref|YP_003777296.1| formamidopyrimidine-DNA
           glycosylase [Herbaspirillum seropedicae SmR1]
          Length = 273

 Score =  505 bits (1300), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/246 (100%), Positives = 246/246 (100%)

Query: 1   MRHSGLRWPFPVGLEALLRGRVIRSTGRRGKYLLIHFDHGTLIVHLGMSGHLRILPPGIA 60
           MRHSGLRWPFPVGLEALLRGRVIRSTGRRGKYLLIHFDHGTLIVHLGMSGHLRILPPGIA
Sbjct: 28  MRHSGLRWPFPVGLEALLRGRVIRSTGRRGKYLLIHFDHGTLIVHLGMSGHLRILPPGIA 87

Query: 61  PQKHDHFDLEVGGQVMRMTDPRRFGAILWHDLADGAVEEHLLLRSLGLEPLEEKFTAREL 120
           PQKHDHFDLEVGGQVMRMTDPRRFGAILWHDLADGAVEEHLLLRSLGLEPLEEKFTAREL
Sbjct: 88  PQKHDHFDLEVGGQVMRMTDPRRFGAILWHDLADGAVEEHLLLRSLGLEPLEEKFTAREL 147

Query: 121 FRQTRGRSAPIKQVLLAGDIVVGVGNIYASESLFKARIHPKTAAGKISLPRYERLAQAIR 180
           FRQTRGRSAPIKQVLLAGDIVVGVGNIYASESLFKARIHPKTAAGKISLPRYERLAQAIR
Sbjct: 148 FRQTRGRSAPIKQVLLAGDIVVGVGNIYASESLFKARIHPKTAAGKISLPRYERLAQAIR 207

Query: 181 ETLAAAIEQGGSSLRDFIAVNGQSGYFQQNYFVYNRTGEACRICATPIRQIKQGQRSTFY 240
           ETLAAAIEQGGSSLRDFIAVNGQSGYFQQNYFVYNRTGEACRICATPIRQIKQGQRSTFY
Sbjct: 208 ETLAAAIEQGGSSLRDFIAVNGQSGYFQQNYFVYNRTGEACRICATPIRQIKQGQRSTFY 267

Query: 241 CVSCQK 246
           CVSCQK
Sbjct: 268 CVSCQK 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 761,270
Number of extensions: 30089
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)