BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0057.p
         (600 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313205|ref|YP_003777297.1| TPR repeat containing protein [...  1194   0.0  
gi|300311388|ref|YP_003775480.1| TPR repeat containing protein [...    56   8e-09

>gi|300313205|ref|YP_003777297.1| TPR repeat containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 600

 Score = 1194 bits (3089), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/600 (99%), Positives = 599/600 (99%)

Query: 1   LKKTIALLTSSLLLTACASFQPTGEKANATAAQDQKSASAKAAARKKTPKAKVQQQEDAL 60
           +KKTIALLTSSLLLTACASFQP+GEKANATAAQDQKSASAKAAARKKTPKAKVQQQEDAL
Sbjct: 1   MKKTIALLTSSLLLTACASFQPSGEKANATAAQDQKSASAKAAARKKTPKAKVQQQEDAL 60

Query: 61  PAVELSEDILYKVLTAEIAFQRGQWQPAYVTMLAAAQQTRDPRLAKRAAEMAVTARQPSE 120
           PAVELSEDILYKVLTAEIAFQRGQWQPAYVTMLAAAQQTRDPRLAKRAAEMAVTARQPSE
Sbjct: 61  PAVELSEDILYKVLTAEIAFQRGQWQPAYVTMLAAAQQTRDPRLAKRAAEMAVTARQPSE 120

Query: 121 ALVAVRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMLLQIQR 180
           ALVAVRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMLLQIQR
Sbjct: 121 ALVAVRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARGPMLLQIQR 180

Query: 181 LLVRAKDKQASFAILQKISQPYGDLMETHLALAQGAFSVGDSTYAQREARAAMKIKPDSE 240
           LLVRAKDKQASFAILQKISQPYGDLMETHLALAQGAFSVGD+TYAQREARAAMKIKPDSE
Sbjct: 181 LLVRAKDKQASFAILQKISQPYGDLMETHLALAQGAFSVGDTTYAQREARAAMKIKPDSE 240

Query: 241 LAVLTAAQVASDNKEATKLVTEFLRKYPDAREVRVAYARTLVEQKDYKDARTQFEALLKE 300
           LAVLTAAQVA DNKEATKLVTEFLRKYPDAREVRVAYARTLVEQKDYKDARTQFEALLKE
Sbjct: 241 LAVLTAAQVAPDNKEATKLVTEFLRKYPDAREVRVAYARTLVEQKDYKDARTQFEALLKE 300

Query: 301 DGEDPTTLFALGVLSAQTDQLKDAEYYLQRYLQVLSAMPEEDRDPSQAILLLSRIAEERR 360
           DGEDPTTLFALGVLSAQTDQLKDAEYYLQRYLQVLSAMPEEDRDPSQAILLLSRIAEERR
Sbjct: 301 DGEDPTTLFALGVLSAQTDQLKDAEYYLQRYLQVLSAMPEEDRDPSQAILLLSRIAEERR 360

Query: 361 DIDGALRYLDRGEPGTEGYVNIQVRRAQLLARKSDIEGARKALEAAQSESTNDGEQLQLL 420
           DIDGALRYLDRGEPGTEGYVNIQVRRAQLLARKSDIEGARKALEAAQSESTNDGEQLQLL
Sbjct: 361 DIDGALRYLDRGEPGTEGYVNIQVRRAQLLARKSDIEGARKALEAAQSESTNDGEQLQLL 420

Query: 421 QAESALLRDANRNQEAADVIKAGLERFPNNTDLLYDYAMVLDKLGKYDEMEASLRRVIKL 480
           QAESALLRDANRNQEAADVIKAGLERFPNNTDLLYDYAMVLDKLGKYDEMEASLRRVIKL
Sbjct: 421 QAESALLRDANRNQEAADVIKAGLERFPNNTDLLYDYAMVLDKLGKYDEMEASLRRVIKL 480

Query: 481 APGNQHAYNALGYSLADRNVRLPEALELIKKAAEMAPEDAFIADSLGWVLFRMGRLDEAE 540
           APGNQHAYNALGYSLADRNVRLPEALELI+KAAEMAPEDAFIADSLGWVLFRMGRLDEAE
Sbjct: 481 APGNQHAYNALGYSLADRNVRLPEALELIRKAAEMAPEDAFIADSLGWVLFRMGRLDEAE 540

Query: 541 TQMRRAYGLRPDAEIGVHLGEVLWTRGKQDEARKIWRDVAQKDPANEVLKSTLTRLNVKP 600
           TQMRRAYGLRPDAEIGVHLGEVLWTRGKQDEARKIWRDVAQKDPANEVLKSTLTRLNVKP
Sbjct: 541 TQMRRAYGLRPDAEIGVHLGEVLWTRGKQDEARKIWRDVAQKDPANEVLKSTLTRLNVKP 600


>gi|300311388|ref|YP_003775480.1| TPR repeat containing protein
           [Herbaspirillum seropedicae SmR1]
          Length = 658

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 140/331 (42%), Gaps = 52/331 (15%)

Query: 266 KYPDAREVRVAYARTLVEQKDYKDARTQFEALLKEDGEDPTTLFA---LGVLSAQTDQLK 322
           K+P    + V  A  L++ +   +A+    A+L  +   PT +FA    G+++    +  
Sbjct: 19  KHPLQDLLDVRKALDLLDSRKTDEAKALCMAVLSRN---PTLVFANHARGLVAMHEGKFA 75

Query: 323 DAEYYLQRYLQVLSAMPEEDRDPSQAILLLSRIAEERRDIDGALRYLDRGEPGTEGYVNI 382
           DAE YL++ ++      E   + +  +L   RI E     + A+R +DR    +      
Sbjct: 76  DAEAYLRKAIEADPENAEYMSNLAGTVLSQDRIDEAIALYEHAIR-IDRDHRAS------ 128

Query: 383 QVRRAQLLARKSDIEGARKALE-AAQSESTNDGEQLQLLQAESALLRDANRNQEAADVIK 441
           ++  A  L  K+D E +    E A + E    G    L +A    L +  R  EA  VI 
Sbjct: 129 RIGLANALHEKNDPEASVAYFEDAVKREPNAPGPLSHLGRA----LIECKRYNEAVAVIL 184

Query: 442 AGLE---RF-PNNTDL---------------LYDYAMVLD---------------KLGKY 467
             LE    F P++T L                +  A++LD               KL + 
Sbjct: 185 KSLELQISFAPSHTALGEAFHAMEMYKEAIESHKTAILLDPQDTYAHNKIADSYLKLNRI 244

Query: 468 DEMEASLRRVIKLAPGNQHAYNALGYSLADRNVRLPEALELIKKAAEMAPEDAFIADSLG 527
           DE    L RVI++AP + +AY  LG S    + R  +A+ +  KA E+  + A   +++G
Sbjct: 245 DEAHEHLLRVIEIAPKDPNAYVKLGSSYFSTSDRFDDAMRMFNKALEVDSKHALTYNNIG 304

Query: 528 WVLFRMGRLDEAETQMRRAYGLRPDAEIGVH 558
            +    G L++A    R+A  LRP+     H
Sbjct: 305 AIQHDHGDLEDAIGNFRKALELRPNYPTARH 335


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.352 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,569,400
Number of extensions: 60953
Number of successful extensions: 321
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 3
Length of query: 600
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 509
Effective length of database: 1,188,985
Effective search space: 605193365
Effective search space used: 605193365
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)